TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000052_2.0 # Protein # Phosphoseryl-tRNA kinase  (PSTK) #
Human (Homo sapiens)
         (348 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269467|gb|KB715222.1| Leptonychotes weddellii isolate WS11...   186   1e-45
gi|472269965|gb|KB714724.1| Leptonychotes weddellii isolate WS11...    37   2.4  
gi|472267279|gb|KB717378.1| Leptonychotes weddellii isolate WS11...    35   9.3  
gi|472269833|gb|KB714856.1| Leptonychotes weddellii isolate WS11...    35   9.3  

>gi|472269467|gb|KB715222.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00516, whole genome
              shotgun sequence
          Length = 1136313

 Score =  186 bits (473), Expect = 1e-45
 Identities = 89/97 (91%), Positives = 92/97 (94%)
 Frame = +3

Query: 73     PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQ 132
              PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRT A+WEDFI+CLKDQDLI SAA E Q
Sbjct: 829575 PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTAALWEDFISCLKDQDLISSAALETQ 829754

Query: 133    SCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK 169
              SCYLLTK AVSRPLFL+LDDNFYYQSMRYEVYQLARK
Sbjct: 829755 SCYLLTKIAVSRPLFLILDDNFYYQSMRYEVYQLARK 829865



 Score =  116 bits (290), Expect = 2e-24
 Identities = 55/74 (74%), Positives = 63/74 (85%)
 Frame = +3

Query: 1      MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMP 60
              MKTAE+ RG  S+GPR+ GLC+LCGLPAAGKST ARAL+HRL+QE+GWA+GVV YDDVMP
Sbjct: 827355 MKTAEDARGARSEGPREIGLCLLCGLPAAGKSTLARALSHRLRQERGWAVGVVTYDDVMP 827534

Query: 61     DAFLAGARARPAPS 74
              DAFL  A ARP  S
Sbjct: 827535 DAFLEEASARPLVS 827576



 Score =  115 bits (289), Expect = 3e-24
 Identities = 54/65 (83%), Positives = 56/65 (86%)
 Frame = +1

Query: 171    SLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPA 230
              SLGFCQLFLDC LETCLQRNGQR Q LP ETIHLM RK+EKPNP KNAWEHNSLTI S  
Sbjct: 830107 SLGFCQLFLDCSLETCLQRNGQRCQPLPAETIHLMARKIEKPNPGKNAWEHNSLTIQSTP 830286

Query: 231    CASEA 235
              C+SEA
Sbjct: 830287 CSSEA 830301



 Score = 58.2 bits (139), Expect = 8e-07
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +3

Query: 262    DTDRIICSTNILHKTDQTLRRIVSQTMKEAKG 293
              ++DRIICS N+LH+ DQTLRRIVSQTMKEAKG
Sbjct: 833634 ESDRIICSANVLHQADQTLRRIVSQTMKEAKG 833729



 Score = 47.8 bits (112), Expect = 0.001
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +3

Query: 236    SLEVTDLLLTALENPVKYAEDNMEQK 261
              SL++TDLLLTALENPVKY EDN+EQK
Sbjct: 833061 SLKLTDLLLTALENPVKYIEDNVEQK 833138


>gi|472269965|gb|KB714724.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00018, whole genome
              shotgun sequence
          Length = 4741398

 Score = 36.6 bits (83), Expect = 2.4
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 181    CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASL 237
              CP  TC++  G  P  L P+ +H        P    NA  +  L IPS AC S+A L
Sbjct: 721150 CPEPTCMRHIGADPDLLAPQRLHKAW-----PITWNNASMYEVLNIPSMACVSDACL 720995


>gi|472267279|gb|KB717378.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold02672, whole genome
              shotgun sequence
          Length = 357217

 Score = 34.7 bits (78), Expect = 9.3
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 181    CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA 235
              CP     +  GQ    LPP+++H   R+L  P+P +   E    T+    C   A
Sbjct: 189803 CPCRLPTRPTGQHSACLPPQSVHAPARRLAAPSPAQALREA*GRTLDGETCPPHA 189639


>gi|472269833|gb|KB714856.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold00150, whole genome
             shotgun sequence
          Length = 2437523

 Score = 34.7 bits (78), Expect = 9.3
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 200   ETIHLMGRK-LEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALEN 249
             ET+HL+G   + K NP++N   HN    P P    E   EV DLL+ + +N
Sbjct: 50992 ETLHLVGSSHIRKGNPQRNPGIHNQRRRPRPLATLEK--EVKDLLILSNQN 50846


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,492,425,301
Number of Sequences: 16710
Number of extensions: 24518261
Number of successful extensions: 113320
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 831
Number of HSP's that attempted gapping in prelim test: 101265
Number of HSP's gapped (non-prelim): 33519
length of query: 348
length of database: 1,052,295,386
effective HSP length: 133
effective length of query: 215
effective length of database: 1,050,072,956
effective search space: 225765685540
effective search space used: 225765685540
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)