Command line: [exonerate -m p2g --showtargetgff -q ./MsrA.fa -t MsrA.carpeta/genomic.fa]
Hostname: [ws101087]
C4 Alignment:
------------
Query: SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Human (Homo sapiens)
Target: gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00480, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 253
Query range: 180 -> 233
Target range: 734074 -> 734233
181 : LysValLeuSerGluHisGlyPheGlyProIleThrThrAspIleArgGluGlyGlnT : 200
:!!||||||||||||||||||!:!|||! !||||||||||||||||||||||||||||
GlnValLeuSerGluHisGlyTyrGlyLeuIleThrThrAspIleArgGluGlyGlnT
734075 : CAGGTTCTTTCGGAGCACGGCTATGGCCTGATCACAACCGACATCCGGGAGGGCCAAA : 734132
201 : hrPheTyrTyrAlaGluAspTyrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTy : 219
|||||||||||||||||!!::!!||||||||||||||||||||||||! !:!!|||||
hrPheTyrTyrAlaGluGluHisHisGlnGlnTyrLeuSerLysAsnArgAspGlyTy
734133 : CCTTCTACTACGCGGAGGAGCACCATCAGCAGTACCTGAGCAAGAACCGCGACGGGTA : 734189
220 : rCysGlyLeuGlyGlyThrGlyValSerCysProValGlyIle : 233
||||||||||||||||||||||||||||||||||:!!|||:!!
rCysGlyLeuGlyGlyThrGlyValSerCysProMetGlyVal
734190 : CTGCGGCCTCGGGGGCACCGGCGTGTCCTGTCCGATGGGTGTT : 734233
vulgar: SPP00000044_2.0 180 233 . gi|472269503|gb|KB715186.1| 734074 734233 + 253 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local gene 734075 734233 253 + . gene_id 1 ; sequence SPP00000044_2.0 ; gene_orientation .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local cds 734075 734233 . + .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local exon 734075 734233 . + . insertions 0 ; deletions 0
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local similarity 734075 734233 253 + . alignment_id 1 ; Query SPP00000044_2.0 ; Align 734075 181 159
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Human (Homo sapiens)
Target: gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00480, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 584
Query range: 111 -> 235
Target range: 964200 -> 802055
112 : LysThrGlyHisAlaGluValValArgValValTyrGlnProGluHisMetSerPheG : 131
|||||||||||||||||||||||||||||||||||||||||||||!.!!!:|||||||
LysThrGlyHisAlaGluValValArgValValTyrGlnProGluArgIleSerPheG
964200 : AAAACTGGCCACGCAGAAGTAGTCCGAGTGGTGTACCAGCCAGAACGCATCAGCTTTG : 964143
132 : luGluLeuLeuLysValPheTrpGluAsnHisAspProThrGln{G} >>>> Targ : 146
||||||||||||||||||||||||||||||||||||||||||||{|}
luGluLeuLeuLysValPheTrpGluAsnHisAspProThrGln{G}++
964142 : AGGAACTGCTCAAGGTCTTCTGGGAGAATCATGACCCGACCCAA{G}gt......... : 964095
147 : et Intron 1 >>>> {ly}MetArgGlnGlyAsnAspHisGlyThrGlnTyrArg : 158
58651 bp {||}||||||||||||||||||||||||||||||||||||
++{ly}MetArgGlnGlyAsnAspHisGlyThrGlnTyrArg
964094 : ................ag{GC}ATGCGCCAAGGCAATGACCACGGCACTCAGTACCGC : 905411
159 : SerAlaIleTyrProThrSerAlaLysGlnMetGluAlaAlaLeuSerSerLysGluA : 178
|||||||||||||||.!!|||.!!:!!!!.||||||!.!||||||!!!|||||||||:
SerAlaIleTyrProAlaSerThrGluHisMetGluValAlaLeuArgSerLysGluA
905410 : TCAGCCATCTATCCAGCCTCTACTGAGCACATGGAGGTGGCCCTGAGGTCGAAAGAAG : 905351
179 : snTyrGlnLys >>>> Target Intron 2 >>>> ValLeuSerGluHisGly : 187
!!||||||||| 103122 bp ||||||||||||||||||
spTyrGlnLys++ ++ValLeuSerGluHisGly
905350 : ACTACCAGAAGgt.........................agGTTCTTTCGGAGCACGGC : 802202
188 : PheGlyProIleThrThrAspIleArgGluGlyGlnThrPheTyrTyrAlaGluAspT : 207
!:!|||! !|||||||||||||||||||||||||||||||||||||||||||||!!::
TyrGlyLeuIleThrThrAspIleArgGluGlyGlnThrPheTyrTyrAlaGluGluH
802201 : TATGGCCTGATCACAACCGACATCCGGGAGGGCCAAACCTTCTACTACGCGGAGGAGC : 802142
208 : yrHisGlnGlnTyrLeuSerLysAsnProAsnGlyTyrCysGlyLeuGlyGlyThrGl : 226
!!||||||||||||||||||||||||! !:!!||||||||||||||||||||||||||
isHisGlnGlnTyrLeuSerLysAsnArgAspGlyTyrCysGlyLeuGlyGlyThrGl
802141 : ACCACCAACAGTACCTGAGCAAGAACCGCGACGGGTACTGCGGCCTCGGGGGCACCGG : 802085
227 : yValSerCysProValGlyIleLysLys : 235
|||||||||||||:!!|||:!!||||||
yValSerCysProMetGlyValLysLys
802084 : CGTGTCCTGTCCGATGGGTGTTAAAAAG : 802056
vulgar: SPP00000044_2.0 111 235 . gi|472269503|gb|KB715186.1| 964200 802055 - 584 M 34 102 S 0 1 5 0 2 I 0 58647 3 0 2 S 1 2 M 35 105 5 0 2 I 0 103118 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local gene 802056 964200 584 - . gene_id 1 ; sequence SPP00000044_2.0 ; gene_orientation +
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local cds 964098 964200 . - .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local exon 964098 964200 . - . insertions 0 ; deletions 0
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local splice5 964096 964097 . - . intron_id 1 ; splice_site "GT"
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local intron 905447 964097 . - . intron_id 1
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local splice3 905447 905448 . - . intron_id 0 ; splice_site "AG"
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local cds 905340 905446 . - .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local exon 905340 905446 . - . insertions 0 ; deletions 0
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local splice5 905338 905339 . - . intron_id 2 ; splice_site "GT"
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local intron 802218 905339 . - . intron_id 2
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local splice3 802218 802219 . - . intron_id 1 ; splice_site "AG"
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local cds 802056 802217 . - .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local exon 802056 802217 . - . insertions 0 ; deletions 0
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local similarity 802056 964200 584 - . alignment_id 1 ; Query SPP00000044_2.0 ; Align 964201 112 102 ; Align 905445 147 105 ; Align 802218 182 162
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Human (Homo sapiens)
Target: gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00480, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 132
Query range: 47 -> 71
Target range: 1073853 -> 1073781
48 : AlaLysHisHisValAsnGlyAsnArgThrValGluProPheProGluGlyThrGl : 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLysHisHisValAsnGlyAsnArgThrValGluProPheProGluGlyThrGl
1073853 : GCCAAACATCATGTCAATGGCAATAGAACAGTTGAACCTTTCCCAGAGGGAACACA : 1073799
67 : nMetAlaValPheGly : 71
||||||||||||||||
nMetAlaValPheGly
1073798 : GATGGCTGTATTTGGT : 1073782
vulgar: SPP00000044_2.0 47 71 . gi|472269503|gb|KB715186.1| 1073853 1073781 - 132 M 24 72
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local gene 1073782 1073853 132 - . gene_id 2 ; sequence SPP00000044_2.0 ; gene_orientation .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local cds 1073782 1073853 . - .
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local exon 1073782 1073853 . - . insertions 0 ; deletions 0
gi|472269503|gb|KB715186.1| exonerate:protein2genome:local similarity 1073782 1073853 132 - . alignment_id 2 ; Query SPP00000044_2.0 ; Align 1073854 48 72
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis