TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A
(MsrA) # Human (Homo sapiens)
         (235 letters)

Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa 
           16,710 sequences; 3,156,886,159 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11...   105   2e-21
gi|472266392|gb|KB718265.1| Leptonychotes weddellii isolate WS11...    62   3e-08
gi|472265748|gb|KB718909.1| Leptonychotes weddellii isolate WS11...    34   7.9  

>gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold00480, whole genome
              shotgun sequence
          Length = 1239330

 Score =  105 bits (263), Expect = 2e-21
 Identities = 46/55 (83%), Positives = 53/55 (96%)
 Frame = -2

Query: 181    KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGIKK 235
              +VLSEHG+G ITTDIREGQTFYYAE++HQQYLSKN +GYCGLGGTGVSCP+G+KK
Sbjct: 802220 QVLSEHGYGLITTDIREGQTFYYAEEHHQQYLSKNRDGYCGLGGTGVSCPMGVKK 802056



 Score =  102 bits (253), Expect = 2e-20
 Identities = 44/53 (83%), Positives = 51/53 (96%)
 Frame = +2

Query: 181    KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGI 233
              +VLSEHG+G ITTDIREGQTFYYAE++HQQYLSKN +GYCGLGGTGVSCP+G+
Sbjct: 734075 QVLSEHGYGLITTDIREGQTFYYAEEHHQQYLSKNRDGYCGLGGTGVSCPMGV 734233



 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = -1

Query: 112    KTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG 146
              KTGHAEVVRVVYQPE +SFEELLKVFWENHDPTQG
Sbjct: 964200 KTGHAEVVRVVYQPERISFEELLKVFWENHDPTQG 964096



 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 37/68 (54%), Positives = 42/68 (61%)
 Frame = -2

Query: 115    HAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALS 174
              H E+V +   P  +    LL  F        GMRQGNDHGTQYRSAIYP S + ME AL 
Sbjct: 905519 HRELVTLALLPGPLQ*SFLLSTF-------PGMRQGNDHGTQYRSAIYPASTEHMEVALR 905361

Query: 175    SKENYQKV 182
              SKE+YQKV
Sbjct: 905360 SKEDYQKV 905337



 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 48      AKHHVNGNRTVEPFPEGTQMAVFG 71
               AKHHVNGNRTVEPFPEGTQMAVFG
Sbjct: 1073853 AKHHVNGNRTVEPFPEGTQMAVFG 1073782


>gi|472266392|gb|KB718265.1| Leptonychotes weddellii isolate WS11-02
              unplaced genomic scaffold scaffold03559, whole genome
              shotgun sequence
          Length = 192384

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 34/49 (69%), Positives = 36/49 (73%)
 Frame = +3

Query: 1      MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAK 49
              MLSATRRA QL  +   FPV RMG+SAS  VSPQEALPGRKE  PV  K
Sbjct: 122076 MLSATRRASQLFPIR--FPVSRMGDSASKTVSPQEALPGRKEPIPVTGK 122216


>gi|472265748|gb|KB718909.1| Leptonychotes weddellii isolate WS11-02
             unplaced genomic scaffold scaffold04203, whole genome
             shotgun sequence
          Length = 144609

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -3

Query: 10    QLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVA------AKHHVNGNRTVEPFP 62
             QLLL+    PVPR G S  +I  P  +LP   +Q+P A      A+ +V+ +    PFP
Sbjct: 95032 QLLLI---CPVPRQGGSTGSIRRPGRSLPRSLQQSPRAQAR*GTAQRYVSLSSVAHPFP 94865


  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 3,087,506,849
  Number of sequences in database:  5788
  
  Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
  nome.fa.01
    Posted date:  Oct 18, 2013  6:11 PM
  Number of letters in database: 69,379,310
  Number of sequences in database:  10,922
  
Lambda     K      H
   0.317    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,022,483,716
Number of Sequences: 16710
Number of extensions: 15910345
Number of successful extensions: 67473
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 516
Number of HSP's that attempted gapping in prelim test: 62454
Number of HSP's gapped (non-prelim): 14766
length of query: 235
length of database: 1,052,295,386
effective HSP length: 128
effective length of query: 107
effective length of database: 1,050,156,506
effective search space: 112366746142
effective search space used: 112366746142
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)