TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000044_2.0 # Protein # Methionine sulfoxide reductase A (MsrA) # Human (Homo sapiens) (235 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11... 105 2e-21 gi|472266392|gb|KB718265.1| Leptonychotes weddellii isolate WS11... 62 3e-08 gi|472265748|gb|KB718909.1| Leptonychotes weddellii isolate WS11... 34 7.9 >gi|472269503|gb|KB715186.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00480, whole genome shotgun sequence Length = 1239330 Score = 105 bits (263), Expect = 2e-21 Identities = 46/55 (83%), Positives = 53/55 (96%) Frame = -2 Query: 181 KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGIKK 235 +VLSEHG+G ITTDIREGQTFYYAE++HQQYLSKN +GYCGLGGTGVSCP+G+KK Sbjct: 802220 QVLSEHGYGLITTDIREGQTFYYAEEHHQQYLSKNRDGYCGLGGTGVSCPMGVKK 802056 Score = 102 bits (253), Expect = 2e-20 Identities = 44/53 (83%), Positives = 51/53 (96%) Frame = +2 Query: 181 KVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCPVGI 233 +VLSEHG+G ITTDIREGQTFYYAE++HQQYLSKN +GYCGLGGTGVSCP+G+ Sbjct: 734075 QVLSEHGYGLITTDIREGQTFYYAEEHHQQYLSKNRDGYCGLGGTGVSCPMGV 734233 Score = 74.3 bits (181), Expect = 5e-12 Identities = 33/35 (94%), Positives = 34/35 (97%) Frame = -1 Query: 112 KTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQG 146 KTGHAEVVRVVYQPE +SFEELLKVFWENHDPTQG Sbjct: 964200 KTGHAEVVRVVYQPERISFEELLKVFWENHDPTQG 964096 Score = 68.6 bits (166), Expect = 3e-10 Identities = 37/68 (54%), Positives = 42/68 (61%) Frame = -2 Query: 115 HAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALS 174 H E+V + P + LL F GMRQGNDHGTQYRSAIYP S + ME AL Sbjct: 905519 HRELVTLALLPGPLQ*SFLLSTF-------PGMRQGNDHGTQYRSAIYPASTEHMEVALR 905361 Query: 175 SKENYQKV 182 SKE+YQKV Sbjct: 905360 SKEDYQKV 905337 Score = 55.5 bits (132), Expect = 3e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 48 AKHHVNGNRTVEPFPEGTQMAVFG 71 AKHHVNGNRTVEPFPEGTQMAVFG Sbjct: 1073853 AKHHVNGNRTVEPFPEGTQMAVFG 1073782 >gi|472266392|gb|KB718265.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03559, whole genome shotgun sequence Length = 192384 Score = 62.0 bits (149), Expect = 3e-08 Identities = 34/49 (69%), Positives = 36/49 (73%) Frame = +3 Query: 1 MLSATRRACQLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVAAK 49 MLSATRRA QL + FPV RMG+SAS VSPQEALPGRKE PV K Sbjct: 122076 MLSATRRASQLFPIR--FPVSRMGDSASKTVSPQEALPGRKEPIPVTGK 122216 >gi|472265748|gb|KB718909.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold04203, whole genome shotgun sequence Length = 144609 Score = 33.9 bits (76), Expect = 7.9 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%) Frame = -3 Query: 10 QLLLLHSLFPVPRMGNSASNIVSPQEALPGRKEQTPVA------AKHHVNGNRTVEPFP 62 QLLL+ PVPR G S +I P +LP +Q+P A A+ +V+ + PFP Sbjct: 95032 QLLLI---CPVPRQGGSTGSIRRPGRSLPRSLQQSPRAQAR*GTAQRYVSLSSVAHPFP 94865 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.317 0.133 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,022,483,716 Number of Sequences: 16710 Number of extensions: 15910345 Number of successful extensions: 67473 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 694 Number of HSP's successfully gapped in prelim test: 516 Number of HSP's that attempted gapping in prelim test: 62454 Number of HSP's gapped (non-prelim): 14766 length of query: 235 length of database: 1,052,295,386 effective HSP length: 128 effective length of query: 107 effective length of database: 1,050,156,506 effective search space: 112366746142 effective search space used: 112366746142 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 75 (33.5 bits)