Command line: [exonerate -m p2g --showtargetgff -q ./Gpx8.fa -t Gpx8.carpeta/genomic.fa]
Hostname: [ws116052]
C4 Alignment:
------------
Query: SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Human (Homo sapiens)
Target: gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00377, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 969
Query range: 0 -> 209
Target range: 621160 -> 625530
1 : MetGluProLeuAlaAlaTyrProLeuLysCysSerGlyProArgAlaLysValPheA : 20
||||||||||||.!!||||||||||||!:!||||||||| !!!:!|||||||||||||
MetGluProLeuThrAlaTyrProLeuArgCysSerGlySerLysAlaLysValPheA
621161 : ATGGAGCCTCTTACAGCGTACCCTTTAAGATGTTCAGGGTCGAAAGCAAAGGTATTTG : 621218
21 : laValLeuLeuSerIleValLeuCysThrValThrLeuPheLeuLeuGlnLeuLysPh : 39
||||||||||||||!!:|||||||||||||||! !|||||||||||||||||||||||
laValLeuLeuSerMetValLeuCysThrValMetLeuPheLeuLeuGlnLeuLysPh
621219 : CAGTTTTACTGTCTATGGTTCTATGCACAGTAATGCTATTTCTTCTACAACTAAAATT : 621275
40 : eLeuLysProLysIleAsnSerPheTyrAlaPheGluValLysAspAlaLysGlyArg : 58
||||||||||||||||||||||||||||.!!|||||||||||||||||||||||||||
eLeuLysProLysIleAsnSerPheTyrThrPheGluValLysAspAlaLysGlyArg
621276 : CCTAAAACCTAAAATCAACAGCTTTTATACCTTTGAAGTGAAAGATGCAAAAGGAAGA : 621332
59 : ThrValSerLeuGluLysTyrLysGlyLys >>>> Target Intron 1 >>>> : 69
||||||||||||||||||!:!||||||||| 556 bp
ThrValSerLeuGluLysPheLysGlyLys++ +
621333 : ACAGTTTCTCTGGAAAAGTTTAAAGGCAAAgt.........................a : 621919
70 : ValSerLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu : 87
|||:!!|||||||||||||||||||||||||||||||||||||||||||||||||||
+ValAlaLeuValValAsnValAlaSerAspCysGlnLeuThrAspArgAsnTyrLeu
621920 : gGTTGCGCTAGTTGTAAACGTGGCTAGTGACTGCCAACTCACAGACAGAAATTACTTA : 621975
88 : GlyLeuLysGluLeuHisLysGluPheGlyProSerHisPheSerValLeuAlaPheP : 107
!.!|||:!!||||||||||||||||||||||||! !||||||||||||||||||||||
AlaLeuGlnGluLeuHisLysGluPheGlyProPheHisPheSerValLeuAlaPheP
621976 : GCACTGCAGGAACTGCACAAAGAGTTTGGACCATTTCACTTCAGCGTCTTGGCCTTTC : 622035
108 : roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValGluSerPheAl : 126
|||||||||||||||||||||||||||||||||||||||||||||||! !||||||||
roCysAsnGlnPheGlyGluSerGluProArgProSerLysGluValValSerPheAl
622036 : CATGCAATCAGTTCGGAGAATCGGAGCCCCGCCCAAGCAAGGAAGTAGTATCTTTTGC : 622092
127 : aArgLysAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer : 145
||||!!.|||||||||||||||||||||||||||||||||||||||||||||||||||
aArgAsnAsnTyrGlyValThrPheProIlePheHisLysIleLysIleLeuGlySer
622093 : AAGAAATAACTACGGAGTGACATTCCCCATCTTCCACAAGATTAAGATTCTAGGATCT : 622149
146 : GluGlyGluProAlaPheArgPheLeuVal{A} >>>> Target Intron 2 >> : 156
|||!.!!!:|||||||||||||||||||||{|} 3187 bp
GluAlaAspProAlaPheArgPheLeuVal{A}++
622150 : GAAGCAGACCCTGCATTTAGATTTCTTGTT{G}gt....................... : 622185
157 : >> {sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr : 173
{||}||||||||||||||||||||||||||||||||||||||||||||||||||
++{sp}SerSerLysLysGluProArgTrpAsnPheTrpLysTyrLeuValAsnPr
622186 : ..ag{AT}TCTTCAAAGAAGGAACCGAGGTGGAATTTCTGGAAGTATCTGGTCAACCC : 625420
174 : oGluGlyGlnValValLysPheTrpLysProGluGluProIleGluValIleArgPro : 192
|||||||||||||||||||! !|||!:!||||||||||||||||||||||||||||||
oGluGlyGlnValValLysSerTrpArgProGluGluProIleGluValIleArgPro
625421 : TGAGGGCCAAGTTGTGAAGTCCTGGAGGCCAGAGGAACCCATTGAAGTCATCAGGCCT : 625477
193 : AspIleAlaAlaLeuValArgGlnValIleIleLysLysLysGluAspLeu : 209
!!:||||||||||||:!!||||||:!!||||||!:!|||||||||||||||
GluIleAlaAlaLeuIleArgGlnMetIleIleArgLysLysGluAspLeu
625478 : GAGATAGCAGCTCTGATAAGACAAATGATCATAAGAAAGAAAGAGGACCTG : 625530
vulgar: SPP00000041_2.0 0 209 . gi|472269606|gb|KB715083.1| 621160 625530 + 969 M 68 204 5 0 2 I 0 552 3 0 2 M 87 261 S 0 1 5 0 2 I 0 3183 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local gene 621161 625530 969 + . gene_id 1 ; sequence SPP00000041_2.0 ; gene_orientation +
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local cds 621161 621364 . + .
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local exon 621161 621364 . + . insertions 0 ; deletions 0
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local splice5 621365 621366 . + . intron_id 1 ; splice_site "GT"
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local intron 621365 621920 . + . intron_id 1
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local splice3 621919 621920 . + . intron_id 0 ; splice_site "AG"
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local cds 621921 622182 . + .
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local exon 621921 622182 . + . insertions 0 ; deletions 0
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local splice5 622183 622184 . + . intron_id 2 ; splice_site "GT"
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local intron 622183 625369 . + . intron_id 2
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local splice3 625368 625369 . + . intron_id 1 ; splice_site "AG"
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local cds 625370 625530 . + .
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local exon 625370 625530 . + . insertions 0 ; deletions 0
gi|472269606|gb|KB715083.1| exonerate:protein2genome:local similarity 621161 625530 969 + . alignment_id 1 ; Query SPP00000041_2.0 ; Align 621161 1 204 ; Align 621921 69 261 ; Align 625372 157 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis