TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) #
Human (Homo sapiens)
(209 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 166 1e-39
gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 119 1e-25
gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 57 9e-07
gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 52 2e-05
gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 49 2e-04
gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 39 0.19
gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11... 37 0.55
gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 37 0.94
gi|472268534|gb|KB716123.1| Leptonychotes weddellii isolate WS11... 34 6.1
>gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00377, whole genome
shotgun sequence
Length = 1354867
Score = 166 bits (419), Expect = 1e-39
Identities = 79/88 (89%), Positives = 83/88 (94%)
Frame = +3
Query: 68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127
+V+LVVNVASDCQLTDRNYL L+ELHKEFGP HFSVLAFPCNQFGESEPRPSKEV SFAR
Sbjct: 621918 EVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR 622097
Query: 128 KNYGVTFPIFHKIKILGSEGEPAFRFLV 155
NYGVTFPIFHKIKILGSE +PAFRFLV
Sbjct: 622098 NNYGVTFPIFHKIKILGSEADPAFRFLV 622181
Score = 108 bits (271), Expect = 1e-22
Identities = 48/56 (85%), Positives = 55/56 (98%)
Frame = +1
Query: 154 LVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209
++DSSKKEPRWNFWKYLVNPEGQVVK W+PEEPIEVIRP+IAAL+RQ+II+KKEDL
Sbjct: 625363 ILDSSKKEPRWNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALIRQMIIRKKEDL 625530
Score = 105 bits (261), Expect = 2e-21
Identities = 52/72 (72%), Positives = 57/72 (79%)
Frame = +2
Query: 1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTXXXXXXXXXXPKINSFYAFEVKDAKGRTV 60
MEPL AYPL+CSG +AKVFAVLLS+VLCTV PKINSFY FEVKDAKGRTV
Sbjct: 621161 MEPLTAYPLRCSGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTV 621340
Query: 61 SLEKYKGKVSLV 72
SLEK+KGKVS +
Sbjct: 621341 SLEKFKGKVSCI 621376
>gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00246, whole genome
shotgun sequence
Length = 1829979
Score = 119 bits (298), Expect = 1e-25
Identities = 51/91 (56%), Positives = 72/91 (79%)
Frame = +2
Query: 68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127
+VSLVVNVAS+C TD++Y L++L ++ GP HF+VLAFPCNQFG+ EP +KE+ESFAR
Sbjct: 1334969 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIESFAR 1335148
Query: 128 KNYGVTFPIFHKIKILGSEGEPAFRFLVDSS 158
+ YGV+FP+F K+ + G+ PAF++L+ S
Sbjct: 1335149 RTYGVSFPMFSKVAVTGTGAHPAFKYLIRES 1335241
Score = 77.4 bits (189), Expect = 5e-13
Identities = 34/57 (59%), Positives = 44/57 (77%)
Frame = +1
Query: 153 FLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209
F +++S KEP WNFWKYLV P+G+VV W P +E IRP I ALVR++I+KK+EDL
Sbjct: 1336816 FSLETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKREDL 1336986
>gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05313, whole genome
shotgun sequence
Length = 66686
Score = 56.6 bits (135), Expect = 9e-07
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = -1
Query: 46 SFYAFEVKD-AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 104
S YAF + A G +SL +GKV L+ NVAS T R+Y + EL + GP VL
Sbjct: 62039 SVYAFSARPLAGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVL 61860
Query: 105 AFPCNQFG 112
FPCNQFG
Sbjct: 61859 GFPCNQFG 61836
Score = 41.6 bits (96), Expect = 0.029
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 23/90 (25%)
Frame = -1
Query: 134 FPIFHKIKILGSEGEPAFRFLVDS-----------------------SKKEPRWNFWKYL 170
F +F K ++ G++ P F FL +S + + WNF K+L
Sbjct: 61538 FTLFEKCEVNGAQAHPLFAFLRESLPAPSDDATALMTDPKFITWSPVCRNDIAWNFEKFL 61359
Query: 171 VNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
V P+G V+ + P I PDI AL+ Q
Sbjct: 61358 VGPDGVPVRRYSRRFPTINIEPDIEALLSQ 61269
>gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01241, whole genome
shotgun sequence
Length = 781753
Score = 52.0 bits (123), Expect = 2e-05
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 38/128 (29%)
Frame = +2
Query: 65 YKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE----------- 113
++G V +V NVAS T+ NY L +LH F +LAFPCNQFG
Sbjct: 571937 FRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQFGRQVRGWLCPWLC 572116
Query: 114 ---------------------------SEPRPSKEVESFARKNYGVTFPIFHKIKILGSE 146
EP + E++ FA Y V F ++ KI + G +
Sbjct: 572117 PRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEFA-AGYNVKFDMYSKICVNGDD 572293
Query: 147 GEPAFRFL 154
P ++++
Sbjct: 572294 AHPLWKWM 572317
>gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00974, whole genome
shotgun sequence
Length = 858563
Score = 48.9 bits (115), Expect = 2e-04
Identities = 27/67 (40%), Positives = 33/67 (49%)
Frame = +1
Query: 46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105
SFY G V ++G+ L+ NVAS T R++ L EL F P VL
Sbjct: 331966 SFYDLSATSLDGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRF-PRRLVVLG 332142
Query: 106 FPCNQFG 112
FPCNQFG
Sbjct: 332143 FPCNQFG 332163
Score = 33.9 bits (76), Expect = 6.1
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 23/93 (24%)
Frame = +2
Query: 133 TFPIFHKIKILGSEGEPAFRFLVDS-----------------------SKKEPRWNFWKY 169
TF + K ++ G P F +L D + + WNF K+
Sbjct: 334577 TFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKF 334756
Query: 170 LVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVI 202
L+ PEG+ + + I PDI L++ I
Sbjct: 334757 LIGPEGEPFRRYSRTFQTINIEPDIKRLLKVAI 334855
>gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00823, whole genome
shotgun sequence
Length = 893735
Score = 38.9 bits (89), Expect = 0.19
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -1
Query: 163 RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKK 206
RWNF K+LV P+G V W + P+ ++ DI ++Q ++K
Sbjct: 486077 RWNFEKFLVGPDGVPVMRWFHKAPVSTVKSDILEYLKQFKTEQK 485946
Score = 38.5 bits (88), Expect = 0.25
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -2
Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 124
L L E PS VL FPCNQFG+ EP + E+ S
Sbjct: 487801 LNALQDELKPSGVVVLGFPCNQFGKQEPGKNSEILS 487694
Score = 38.1 bits (87), Expect = 0.32
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 163 RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
RWNF K+LV P+G V W PI ++ DI ++Q
Sbjct: 524953 RWNFEKFLVGPDGVPVMRWFHRTPISTVKSDILEYLKQ 525066
Score = 37.0 bits (84), Expect = 0.72
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV 122
L L +E P VL FPCNQFG+ EP + E+
Sbjct: 523176 LNALQEELKPLGLVVLGFPCNQFGKQEPGENSEI 523277
>gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03380, whole genome
shotgun sequence
Length = 238997
Score = 37.4 bits (85), Expect = 0.55
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -3
Query: 147 GEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200
G P F + RWNF K+LV P+G + W + ++ DI A +R+
Sbjct: 238497 GSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPIMRWYHRTTVNTVKMDILAYMRR 238336
>gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01312, whole genome
shotgun sequence
Length = 700520
Score = 36.6 bits (83), Expect = 0.94
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV 122
L L +E P +L FPCNQFG+ EP + E+
Sbjct: 633847 LNALQEELEPFGLVILGFPCNQFGKQEPGENSEI 633948
>gi|472268534|gb|KB716123.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01417, whole genome
shotgun sequence
Length = 618331
Score = 33.9 bits (76), Expect = 6.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 144 GSEGEPAFRFLV-DSSKKEPRWNFWKYLVNPEGQVVKFW 181
G EGE FL+ DS +K+PR FW + V QV W
Sbjct: 132680 GHEGEKLMSFLLPDSREKDPRLQFWVFQVKSSTQVGNSW 132564
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 784,743,853
Number of Sequences: 16710
Number of extensions: 11250194
Number of successful extensions: 40524
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 37674
Number of HSP's gapped (non-prelim): 7975
length of query: 209
length of database: 1,052,295,386
effective HSP length: 126
effective length of query: 83
effective length of database: 1,050,189,926
effective search space: 87165763858
effective search space used: 87165763858
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)