TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000041_2.0 # Protein # Glutathione peroxidase 8 (GPx8) # Human (Homo sapiens) (209 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 166 1e-39 gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 119 1e-25 gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 57 9e-07 gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 52 2e-05 gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 49 2e-04 gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 39 0.19 gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11... 37 0.55 gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 37 0.94 gi|472268534|gb|KB716123.1| Leptonychotes weddellii isolate WS11... 34 6.1 >gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00377, whole genome shotgun sequence Length = 1354867 Score = 166 bits (419), Expect = 1e-39 Identities = 79/88 (89%), Positives = 83/88 (94%) Frame = +3 Query: 68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127 +V+LVVNVASDCQLTDRNYL L+ELHKEFGP HFSVLAFPCNQFGESEPRPSKEV SFAR Sbjct: 621918 EVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR 622097 Query: 128 KNYGVTFPIFHKIKILGSEGEPAFRFLV 155 NYGVTFPIFHKIKILGSE +PAFRFLV Sbjct: 622098 NNYGVTFPIFHKIKILGSEADPAFRFLV 622181 Score = 108 bits (271), Expect = 1e-22 Identities = 48/56 (85%), Positives = 55/56 (98%) Frame = +1 Query: 154 LVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209 ++DSSKKEPRWNFWKYLVNPEGQVVK W+PEEPIEVIRP+IAAL+RQ+II+KKEDL Sbjct: 625363 ILDSSKKEPRWNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALIRQMIIRKKEDL 625530 Score = 105 bits (261), Expect = 2e-21 Identities = 52/72 (72%), Positives = 57/72 (79%) Frame = +2 Query: 1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTXXXXXXXXXXPKINSFYAFEVKDAKGRTV 60 MEPL AYPL+CSG +AKVFAVLLS+VLCTV PKINSFY FEVKDAKGRTV Sbjct: 621161 MEPLTAYPLRCSGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTV 621340 Query: 61 SLEKYKGKVSLV 72 SLEK+KGKVS + Sbjct: 621341 SLEKFKGKVSCI 621376 >gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00246, whole genome shotgun sequence Length = 1829979 Score = 119 bits (298), Expect = 1e-25 Identities = 51/91 (56%), Positives = 72/91 (79%) Frame = +2 Query: 68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFAR 127 +VSLVVNVAS+C TD++Y L++L ++ GP HF+VLAFPCNQFG+ EP +KE+ESFAR Sbjct: 1334969 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIESFAR 1335148 Query: 128 KNYGVTFPIFHKIKILGSEGEPAFRFLVDSS 158 + YGV+FP+F K+ + G+ PAF++L+ S Sbjct: 1335149 RTYGVSFPMFSKVAVTGTGAHPAFKYLIRES 1335241 Score = 77.4 bits (189), Expect = 5e-13 Identities = 34/57 (59%), Positives = 44/57 (77%) Frame = +1 Query: 153 FLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKKEDL 209 F +++S KEP WNFWKYLV P+G+VV W P +E IRP I ALVR++I+KK+EDL Sbjct: 1336816 FSLETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKREDL 1336986 >gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05313, whole genome shotgun sequence Length = 66686 Score = 56.6 bits (135), Expect = 9e-07 Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -1 Query: 46 SFYAFEVKD-AKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 104 S YAF + A G +SL +GKV L+ NVAS T R+Y + EL + GP VL Sbjct: 62039 SVYAFSARPLAGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVL 61860 Query: 105 AFPCNQFG 112 FPCNQFG Sbjct: 61859 GFPCNQFG 61836 Score = 41.6 bits (96), Expect = 0.029 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 23/90 (25%) Frame = -1 Query: 134 FPIFHKIKILGSEGEPAFRFLVDS-----------------------SKKEPRWNFWKYL 170 F +F K ++ G++ P F FL +S + + WNF K+L Sbjct: 61538 FTLFEKCEVNGAQAHPLFAFLRESLPAPSDDATALMTDPKFITWSPVCRNDIAWNFEKFL 61359 Query: 171 VNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200 V P+G V+ + P I PDI AL+ Q Sbjct: 61358 VGPDGVPVRRYSRRFPTINIEPDIEALLSQ 61269 >gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01241, whole genome shotgun sequence Length = 781753 Score = 52.0 bits (123), Expect = 2e-05 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 38/128 (29%) Frame = +2 Query: 65 YKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGE----------- 113 ++G V +V NVAS T+ NY L +LH F +LAFPCNQFG Sbjct: 571937 FRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQFGRQVRGWLCPWLC 572116 Query: 114 ---------------------------SEPRPSKEVESFARKNYGVTFPIFHKIKILGSE 146 EP + E++ FA Y V F ++ KI + G + Sbjct: 572117 PRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEFA-AGYNVKFDMYSKICVNGDD 572293 Query: 147 GEPAFRFL 154 P ++++ Sbjct: 572294 AHPLWKWM 572317 >gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00974, whole genome shotgun sequence Length = 858563 Score = 48.9 bits (115), Expect = 2e-04 Identities = 27/67 (40%), Positives = 33/67 (49%) Frame = +1 Query: 46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 105 SFY G V ++G+ L+ NVAS T R++ L EL F P VL Sbjct: 331966 SFYDLSATSLDGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRF-PRRLVVLG 332142 Query: 106 FPCNQFG 112 FPCNQFG Sbjct: 332143 FPCNQFG 332163 Score = 33.9 bits (76), Expect = 6.1 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 23/93 (24%) Frame = +2 Query: 133 TFPIFHKIKILGSEGEPAFRFLVDS-----------------------SKKEPRWNFWKY 169 TF + K ++ G P F +L D + + WNF K+ Sbjct: 334577 TFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKF 334756 Query: 170 LVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVI 202 L+ PEG+ + + I PDI L++ I Sbjct: 334757 LIGPEGEPFRRYSRTFQTINIEPDIKRLLKVAI 334855 >gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence Length = 893735 Score = 38.9 bits (89), Expect = 0.19 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -1 Query: 163 RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQVIIKKK 206 RWNF K+LV P+G V W + P+ ++ DI ++Q ++K Sbjct: 486077 RWNFEKFLVGPDGVPVMRWFHKAPVSTVKSDILEYLKQFKTEQK 485946 Score = 38.5 bits (88), Expect = 0.25 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -2 Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 124 L L E PS VL FPCNQFG+ EP + E+ S Sbjct: 487801 LNALQDELKPSGVVVLGFPCNQFGKQEPGKNSEILS 487694 Score = 38.1 bits (87), Expect = 0.32 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 163 RWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200 RWNF K+LV P+G V W PI ++ DI ++Q Sbjct: 524953 RWNFEKFLVGPDGVPVMRWFHRTPISTVKSDILEYLKQ 525066 Score = 37.0 bits (84), Expect = 0.72 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +3 Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV 122 L L +E P VL FPCNQFG+ EP + E+ Sbjct: 523176 LNALQEELKPLGLVVLGFPCNQFGKQEPGENSEI 523277 >gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03380, whole genome shotgun sequence Length = 238997 Score = 37.4 bits (85), Expect = 0.55 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = -3 Query: 147 GEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWKPEEPIEVIRPDIAALVRQ 200 G P F + RWNF K+LV P+G + W + ++ DI A +R+ Sbjct: 238497 GSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPIMRWYHRTTVNTVKMDILAYMRR 238336 >gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01312, whole genome shotgun sequence Length = 700520 Score = 36.6 bits (83), Expect = 0.94 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 89 LKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEV 122 L L +E P +L FPCNQFG+ EP + E+ Sbjct: 633847 LNALQEELEPFGLVILGFPCNQFGKQEPGENSEI 633948 >gi|472268534|gb|KB716123.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01417, whole genome shotgun sequence Length = 618331 Score = 33.9 bits (76), Expect = 6.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -3 Query: 144 GSEGEPAFRFLV-DSSKKEPRWNFWKYLVNPEGQVVKFW 181 G EGE FL+ DS +K+PR FW + V QV W Sbjct: 132680 GHEGEKLMSFLLPDSREKDPRLQFWVFQVKSSTQVGNSW 132564 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.320 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 784,743,853 Number of Sequences: 16710 Number of extensions: 11250194 Number of successful extensions: 40524 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 588 Number of HSP's successfully gapped in prelim test: 315 Number of HSP's that attempted gapping in prelim test: 37674 Number of HSP's gapped (non-prelim): 7975 length of query: 209 length of database: 1,052,295,386 effective HSP length: 126 effective length of query: 83 effective length of database: 1,050,189,926 effective search space: 87165763858 effective search space used: 87165763858 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 74 (33.1 bits)