Command line: [exonerate -m p2g --showtargetgff -q ./Gpx7.fa -t Gpx7.carpeta/genomic.fa]
Hostname: [ws116052]
C4 Alignment:
------------
Query: SPP00000040_2.0 # Protein # Glutathione peroxidase 7 (GPx7) # Human (Homo sapiens)
Target: gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00246, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 909
Query range: 0 -> 187
Target range: 1330054 -> 1336986
1 : MetValAlaAlaThrValAlaAlaAlaTrpLeuLeuLeuTrpAlaAlaAlaCysAl : 19
:!::!!!.!|||.!!|||!.!||||||||||||||||||! !||||||!.!|||||
ValMetValAlaAlaValValAlaAlaTrpLeuLeuLeuSerAlaAlaValCysAl
1330055 : GTCATGGTGGCTGCAGTGGTGGCGGCGTGGCTGCTCCTGTCGGCCGCGGTCTGCGC : 1330109
20 : aGlnGlnGluGlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuV : 38
||||!:!|||||||||||||||||||||||||||||||||||||||||||||||||
aGlnArgGluGlnAspPheTyrAspPheLysAlaValAsnIleArgGlyLysLeuV
1330110 : TCAGCGGGAACAGGACTTCTACGACTTCAAGGCGGTCAACATCCGGGGCAAGTTGG : 1330166
39 : alSerLeuGluLysTyrArgGlySer >>>> Target Intron 1 >>>> V : 47
|||||||||||||||||||||||||| 4779 bp |
alSerLeuGluLysTyrArgGlySer++ ++V
1330167 : TGTCACTGGAGAAGTACCGCGGCTCGgt.........................agG : 1334972
48 : alSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArg : 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
alSerLeuValValAsnValAlaSerGluCysGlyPheThrAspGlnHisTyrArg
1334973 : TGTCCCTGGTGGTGAACGTGGCTAGCGAGTGCGGCTTCACGGACCAGCATTACCGA : 1335026
66 : AlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPh : 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
AlaLeuGlnGlnLeuGlnArgAspLeuGlyProHisHisPheAsnValLeuAlaPh
1335027 : GCCTTGCAGCAGCTGCAGCGGGACCTGGGGCCCCACCACTTCAATGTGCTTGCCTT : 1335083
85 : eProCysAsnGlnPheGlyGlnGlnGluProAspSerAsnLysGluIleGluSerP : 103
||||||||||||||||||||||||||||||||||!!!|||||||||||||||||||
eProCysAsnGlnPheGlyGlnGlnGluProAspThrAsnLysGluIleGluSerP
1335084 : CCCCTGCAACCAGTTCGGCCAGCAGGAGCCCGATACCAACAAGGAGATCGAGAGCT : 1335140
104 : heAlaArgArgThrTyrSerValSerPheProMetPheSerLysIleAlaValThr : 121
|||||||||||||||||.!!||||||||||||||||||||||||:!!|||||||||
heAlaArgArgThrTyrGlyValSerPheProMetPheSerLysValAlaValThr
1335141 : TTGCCCGCCGCACCTACGGTGTTTCTTTCCCCATGTTTAGCAAGGTCGCAGTCACA : 1335194
122 : GlyThrGlyAlaHisProAlaPheLysTyrLeuAla{G} >>>> Target Int : 134
||||||||||||||||||||||||||||||||| !{|} 1592 b
GlyThrGlyAlaHisProAlaPheLysTyrLeuIle{G}++
1335195 : GGCACTGGTGCCCACCCTGCCTTCAAGTACCTGATC{C}gt............... : 1335236
135 : ron 2 >>>> {ln}ThrSerGlyLysGluProThrTrpAsnPheTrpLysTyrL : 148
p {||}||||||||||||||||||||||||||||||||||||||||
++{ln}ThrSerGlyLysGluProThrTrpAsnPheTrpLysTyrL
1335237 : ..........ag{AG}ACTTCTGGGAAGGAGCCCACCTGGAACTTCTGGAAGTACC : 1336867
149 : euValAlaProAspGlyLysValValGlyAlaTrpAspProThrValSerValGlu : 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
euValAlaProAspGlyLysValValGlyAlaTrpAspProThrValSerValGlu
1336868 : TAGTGGCCCCAGATGGAAAGGTAGTAGGGGCTTGGGACCCAACTGTGTCGGTGGAA : 1336921
167 : GluValArgProGlnIleThrAlaLeuValArgLysLeuIleLeuLeuLysArgGl : 185
|||:!!||||||||||||||||||||||||||||||||||||||| !||||||||
GluIleArgProGlnIleThrAlaLeuValArgLysLeuIleLeuLysLysArgGl
1336922 : GAGATCAGGCCCCAGATCACAGCACTCGTGAGGAAGCTCATCCTGAAGAAGCGAGA : 1336978
186 : uAspLeu : 187
|||||||
uAspLeu
1336979 : AGACTTA : 1336986
vulgar: SPP00000040_2.0 0 187 . gi|472269737|gb|KB714952.1| 1330054 1336986 + 909 M 46 138 5 0 2 I 0 4775 3 0 2 M 87 261 S 0 1 5 0 2 I 0 1588 3 0 2 S 1 2 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local gene 1330055 1336986 909 + . gene_id 1 ; sequence SPP00000040_2.0 ; gene_orientation +
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local cds 1330055 1330192 . + .
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local exon 1330055 1330192 . + . insertions 0 ; deletions 0
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local splice5 1330193 1330194 . + . intron_id 1 ; splice_site "GT"
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local intron 1330193 1334971 . + . intron_id 1
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local splice3 1334970 1334971 . + . intron_id 0 ; splice_site "AG"
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local cds 1334972 1335233 . + .
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local exon 1334972 1335233 . + . insertions 0 ; deletions 0
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local splice5 1335234 1335235 . + . intron_id 2 ; splice_site "GT"
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local intron 1335234 1336825 . + . intron_id 2
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local splice3 1336824 1336825 . + . intron_id 1 ; splice_site "AG"
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local cds 1336826 1336986 . + .
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local exon 1336826 1336986 . + . insertions 0 ; deletions 0
gi|472269737|gb|KB714952.1| exonerate:protein2genome:local similarity 1330055 1336986 909 + . alignment_id 1 ; Query SPP00000040_2.0 ; Align 1330055 1 138 ; Align 1334972 47 261 ; Align 1336828 135 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis