TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000040_2.0 # Protein # Glutathione peroxidase 7 (GPx7) #
Human (Homo sapiens)
(187 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 179 9e-44
gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 114 2e-24
gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 66 8e-10
gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 57 5e-07
gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 55 3e-06
gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 44 0.006
gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 43 0.008
gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11... 42 0.022
gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11... 34 3.6
gi|472269969|gb|KB714720.1| Leptonychotes weddellii isolate WS11... 34 3.6
gi|472268686|gb|KB715971.1| Leptonychotes weddellii isolate WS11... 33 6.1
gi|472267758|gb|KB716899.1| Leptonychotes weddellii isolate WS11... 33 7.9
>gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00246, whole genome
shotgun sequence
Length = 1829979
Score = 179 bits (453), Expect = 9e-44
Identities = 85/95 (89%), Positives = 89/95 (93%)
Frame = +2
Query: 47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106
VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPD+NKEIESFARR
Sbjct: 1334972 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIESFARR 1335151
Query: 107 TYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPT 141
TY VSFPMFSK+AVTGTGAHPAFKYL + S P+
Sbjct: 1335152 TYGVSFPMFSKVAVTGTGAHPAFKYLIRES*SFPS 1335256
Score = 110 bits (276), Expect = 3e-23
Identities = 51/54 (94%), Positives = 53/54 (98%)
Frame = +1
Query: 134 QTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187
+TSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEE+RPQITALVRKLIL KREDL
Sbjct: 1336825 ETSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPQITALVRKLILKKREDL 1336986
Score = 59.7 bits (143), Expect = 8e-08
Identities = 28/30 (93%), Positives = 30/30 (100%)
Frame = +2
Query: 20 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSL 49
Q+EQDFYDFKAVNIRGKLVSLEKYRGSVS+
Sbjct: 1330112 QREQDFYDFKAVNIRGKLVSLEKYRGSVSV 1330201
>gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00377, whole genome
shotgun sequence
Length = 1354867
Score = 114 bits (286), Expect = 2e-24
Identities = 51/86 (59%), Positives = 68/86 (79%)
Frame = +3
Query: 47 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR 106
V+LVVNVAS+C TD++Y ALQ+L ++ GP HF+VLAFPCNQFG+ EP +KE+ SFAR
Sbjct: 621921 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARN 622100
Query: 107 TYSVSFPMFSKIAVTGTGAHPAFKYL 132
Y V+FP+F KI + G+ A PAF++L
Sbjct: 622101 NYGVTFPIFHKIKILGSEADPAFRFL 622178
Score = 73.6 bits (179), Expect = 5e-12
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = +1
Query: 132 LAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 187
+ +S KEP WNFWKYLV P+G+VV +W P +E +RP+I AL+R++I+ K+EDL
Sbjct: 625363 ILDSSKKEPRWNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALIRQMIIRKKEDL 625530
>gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01241, whole genome
shotgun sequence
Length = 781753
Score = 66.2 bits (160), Expect = 8e-10
Identities = 44/128 (34%), Positives = 57/128 (44%), Gaps = 38/128 (29%)
Frame = +2
Query: 43 YRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQ----------- 91
+RG V +V NVAS+ G T+ +Y L L +LAFPCNQFG+
Sbjct: 571937 FRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQFGRQVRGWLCPWLC 572116
Query: 92 ---------------------------QEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG 124
QEP SN EI+ FA Y+V F M+SKI V G
Sbjct: 572117 PRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEFA-AGYNVKFDMYSKICVNGDD 572293
Query: 125 AHPAFKYL 132
AHP +K++
Sbjct: 572294 AHPLWKWM 572317
>gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05313, whole genome
shotgun sequence
Length = 66686
Score = 57.0 bits (136), Expect = 5e-07
Identities = 30/58 (51%), Positives = 36/58 (62%)
Frame = -1
Query: 35 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQ 92
G+ +SL RG V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG Q
Sbjct: 62003 GEPLSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 61830
Score = 40.0 bits (92), Expect = 0.065
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 31/122 (25%)
Frame = -1
Query: 86 CNQFGQQEPDSNKEIESFARRT-----YSVSFPMFSKIAVTGTGAHPAFKYLAQT----- 135
C+ F QE N+EI + + + +F +F K V G AHP F +L ++
Sbjct: 61628 CSPF-PQENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPS 61452
Query: 136 ------------------SGKEPTWNFWKYLVAPDGKVVGAWD---PTVSVEEVRPQITA 174
+ WNF K+LV PDG V + PT+++E P I A
Sbjct: 61451 DDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTINIE---PDIEA 61281
Query: 175 LV 176
L+
Sbjct: 61280 LL 61275
>gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00974, whole genome
shotgun sequence
Length = 858563
Score = 54.7 bits (130), Expect = 3e-06
Identities = 29/70 (41%), Positives = 38/70 (54%)
Frame = +1
Query: 23 QDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVL 82
+ FYD A ++ G+ V +RG L+ NVAS G T + + L +LQ P VL
Sbjct: 331963 KSFYDLSATSLDGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRF-PRRLVVL 332139
Query: 83 AFPCNQFGQQ 92
FPCNQFG Q
Sbjct: 332140 GFPCNQFGHQ 332169
Score = 35.0 bits (79), Expect = 2.1
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 23/96 (23%)
Frame = +2
Query: 108 YSVSFPMFSKIAVTGTGAHPAFKYL-----------------------AQTSGKEPTWNF 144
+ +F + K V G HP F YL + + WNF
Sbjct: 334568 FQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNF 334747
Query: 145 WKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLI 180
K+L+ P+G+ + T + P I L++ I
Sbjct: 334748 EKFLIGPEGEPFRRYSRTFQTINIEPDIKRLLKVAI 334855
>gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01312, whole genome
shotgun sequence
Length = 700520
Score = 43.5 bits (101), Expect = 0.006
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 67 LQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100
L LQ +L P +L FPCNQFG+QEP N EI
Sbjct: 633847 LNALQEELEPFGLVILGFPCNQFGKQEPGENSEI 633948
>gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00823, whole genome
shotgun sequence
Length = 893735
Score = 43.1 bits (100), Expect = 0.008
Identities = 21/36 (58%), Positives = 23/36 (63%)
Frame = -2
Query: 67 LQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIES 102
L LQ +L P VL FPCNQFG+QEP N EI S
Sbjct: 487801 LNALQDELKPSGVVVLGFPCNQFGKQEPGKNSEILS 487694
Score = 43.1 bits (100), Expect = 0.008
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +3
Query: 67 LQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI 100
L LQ +L P VL FPCNQFG+QEP N EI
Sbjct: 523176 LNALQEELKPLGLVVLGFPCNQFGKQEPGENSEI 523277
Score = 35.0 bits (79), Expect = 2.1
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 26 YDFKAVNIRGKL-VSLEKYRGSVSLVVNVASECGFTDQH 63
YD++A+ + GK + ++Y G L VNVA+ CG T Q+
Sbjct: 520256 YDYEALTLNGKEHIQFKRYAGKPVLFVNVATYCGLTAQY 520372
>gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00202, whole genome
shotgun sequence
Length = 2068787
Score = 41.6 bits (96), Expect = 0.022
Identities = 36/100 (36%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = -1
Query: 35 GKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEP 94
G+ +SL RG V L NVAS G Y + QLQR L P VL F + F QE
Sbjct: 965984 GEPMSLGCLRGKVLLFQNVASL*GPKVWDYTQMNQLQRRLRPQGLVVLGFRRHHFRHQEN 965805
Query: 95 DSNKEIESF-----ARRTYSVSFPMFSKIAVTGTGAHPAF 129
++EI + AR + K V G AHP F
Sbjct: 965804 AKSEEILNSLEHVPARGWLQPNLSPSEKGEVNGVQAHPLF 965685
>gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03380, whole genome
shotgun sequence
Length = 238997
Score = 34.3 bits (77), Expect = 3.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 142 WNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRK 178
WNF K+LV PDG + W +V V+ I A +R+
Sbjct: 238446 WNFEKFLVGPDGVPIMRWYHRTTVNTVKMDILAYMRR 238336
>gi|472269969|gb|KB714720.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00014, whole genome
shotgun sequence
Length = 6117710
Score = 34.3 bits (77), Expect = 3.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 94 PDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDG 153
P+SN+E S + R YSV + A+ TG FK +A G + N W+ L D
Sbjct: 5442612 PNSNEENVSSSLRGYSVKQDAVKQTAMKRTGCFEIFKVIASMLGLSTSPNMWEALRKADA 5442433
Query: 154 K 154
+
Sbjct: 5442432 Q 5442430
>gi|472268686|gb|KB715971.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01265, whole genome
shotgun sequence
Length = 694982
Score = 33.5 bits (75), Expect = 6.1
Identities = 26/88 (29%), Positives = 38/88 (43%)
Frame = +2
Query: 62 QHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 121
QH+++L +L+R + HFN + FP F I F R Y FS+I +
Sbjct: 444929 QHWKSLAKLRRTISTKHFNEVQFPS*LF-------VLIIHLFKNRAY------FSRIKI- 445066
Query: 122 GTGAHPAFKYLAQTSGKEPTWNFWKYLV 149
+ K L T +E FWK L+
Sbjct: 445067 ------SIKILEFTKSRETLGIFWKVLI 445132
>gi|472267758|gb|KB716899.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02193, whole genome
shotgun sequence
Length = 451417
Score = 33.1 bits (74), Expect = 7.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +1
Query: 34 RGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFP 85
RG+ + L R V +++ C RA+++ QRDLG HFN+L P
Sbjct: 363925 RGQELRLHPSRSLVLQEIHLPFSCPCKTFPLRAIRKFQRDLGLIHFNLLLLP 364080
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.320 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 627,449,159
Number of Sequences: 16710
Number of extensions: 8587951
Number of successful extensions: 35030
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 339
Number of HSP's that attempted gapping in prelim test: 32695
Number of HSP's gapped (non-prelim): 6587
length of query: 187
length of database: 1,052,295,386
effective HSP length: 124
effective length of query: 63
effective length of database: 1,050,223,346
effective search space: 66164070798
effective search space used: 66164070798
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)