Command line: [exonerate -m p2g --showtargetgff -q ./Gpx6.fa -t Gpx6.carpeta/genomic.fa]
Hostname: [ws116052]
C4 Alignment:
------------
Query: SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Human (Homo sapiens)
Target: gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 780
Query range: 28 -> 220
Target range: 520219 -> 525075
29 : LysValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrL : 48
:!!:!!|||||| !!|||! !|||! !||||||||||||!!:|||! !||||||||||
GlnMetAspCysTyrLysAspValLysGlyThrIleTyrAspTyrGluAlaLeuThrL
520220 : CAGATGGATTGCTACAAAGATGTGAAAGGCACAATCTATGACTATGAAGCCCTCACTC : 520277
49 : euAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheVa : 67
||||||||:!!|||:!!||||||||||||!:!!:!|||||||||! !|||||||||||
euAsnGlyLysGluHisIleGlnPheLysArgTyrAlaGlyLysProValLeuPheVa
520278 : TGAATGGAAAGGAGCACATTCAGTTCAAGCGGTATGCGGGCAAGCCCGTCCTCTTTGT : 520334
68 : lAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G} >>>> Target I : 81
||||||||||.!!||| ||||||.!!||||||||||||{|} 2797
lAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++
520335 : CAACGTGGCCACCTACTGTGGCCTGACAGCTCAGTATCCT{G}gt............. : 520379
82 : ntron 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValI : 95
bp {||}||||||||||||||||||||||||||| !!!.|||:!!:
++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProLeuGlyLeuV
520380 : ............ag{AA}CTGAATGCACTTCAGGAGGAGCTGAAGCCCTTGGGCCTGG : 523215
96 : leValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGl : 114
!!||||||!.!|||||||||||||||||||||||||||||||||||| !||||||||
alValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGl
523216 : TTGTGTTGGGCTTTCCCTGCAACCAGTTCGGAAAGCAGGAACCAGGAGAGAACTCAGA : 523272
115 : uIleLeuLeuGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrVal : 122
|||||||! !||||||{||} 415 bp {|}||||||
uIleLeuProGlyLeu{Ly}++ ++{s}TyrVal
523273 : GATTCTTCCGGGACTG{AA}gt.........................ag{G}TATGTC : 523711
123 : CysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnG : 142
!!||||||!!!|||!:!||||||!:!|||||||||||||||||||||||||||||||
ArgProGlyArgGlyTyrValProAsnPheGlnLeuPheGluLysGlyAspValAsnG
523712 : CGTCCAGGGAGAGGATACGTACCCAACTTCCAGCTCTTTGAGAAAGGGGATGTGAATG : 523771
143 : lyGluLysGluGlnLysValPheThrPheLeuLys >>>> Target Intron 3 : 154
||||||||||||||||||||||||||||||||||| 1068 bp
lyGluLysGluGlnLysValPheThrPheLeuLys++
523772 : GCGAGAAGGAACAGAAGGTCTTCACCTTCTTGAAGgt..................... : 523809
155 : >>>> AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheT : 171
!|||||||||! ! !!|||!!::!!||||||! !! !!!!!!.:!!! !|
++LeuSerCysProHisProSerGluValLeuGlyLeuPheArgHisIleSerT
523810 : ....agCTCTCCTGCCCTCACCCCTCTGAGGTTCTGGGCTTATTCAGACATATATCCT : 524926
172 : rpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr : 190
||!!:|||:!:|||||||||||||||||||||||||||||||||||||||||||||||
rpAspProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr
524927 : GGGATCCCGTAAAGGTCCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCC : 524983
191 : oAspGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSer : 209
|||||||||||||||||||!.!|||||||||!:!.!!|||:!!|||||||||||||||
oAspGlyValProValMetArgTrpPheHisArgThrProIleSerThrValLysSer
524984 : TGATGGAGTCCCTGTCATGCGCTGGTTCCACCGGACTCCCATCAGCACGGTCAAGTCA : 525040
210 : AspIleLeuGluTyrLeuLysGlnPheAsnThr : 220
|||||||||||||||||||||||||||!!.!:!
AspIleLeuGluTyrLeuLysGlnPheLysSer
525041 : GACATCCTGGAGTACCTGAAACAGTTCAAAAGT : 525075
vulgar: SPP00000038_2.0 28 220 . gi|472269128|gb|KB715529.1| 520219 525075 + 780 M 52 156 S 0 1 5 0 2 I 0 2793 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 411 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1064 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local gene 520220 525075 780 + . gene_id 1 ; sequence SPP00000038_2.0 ; gene_orientation +
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 520220 520376 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 520220 520376 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 520377 520378 . + . intron_id 1 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 520377 523173 . + . intron_id 1
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 523172 523173 . + . intron_id 0 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 523174 523291 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 523174 523291 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 523292 523293 . + . intron_id 2 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 523292 523706 . + . intron_id 2
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 523705 523706 . + . intron_id 1 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 523707 523806 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 523707 523806 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 523807 523808 . + . intron_id 3 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 523807 524874 . + . intron_id 3
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 524873 524874 . + . intron_id 2 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 524875 525075 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 524875 525075 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local similarity 520220 525075 780 + . alignment_id 1 ; Query SPP00000038_2.0 ; Align 520220 29 156 ; Align 523176 82 114 ; Align 523708 121 99 ; Align 524875 154 201
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000038_2.0 # Protein # Glutathione peroxidase 6 (GPx6) # Human (Homo sapiens)
Target: gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 902
Query range: 28 -> 220
Target range: 492262 -> 485954
29 : LysValAspCysAsnLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrL : 48
:!!:!!|||||| !!|||||||||||||||||||||||||||||||||||||||||||
GlnMetAspCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuThrL
492262 : CAGATGGATTGCTACAAAGGGGTGACGGGCACCATCTATGAGTACGGAGCCCTCACCC : 492205
49 : euAsnGlyGluGluTyrIleGlnPheLysGlnPheAlaGlyLysHisValLeuPheVa : 67
|||||! !|||||||||||||||||||||!:!!:!|||||||||||||||||||||||
euAsnGluGluGluTyrIleGlnPheLysArgTyrAlaGlyLysHisValLeuPheVa
492204 : TCAATGAAGAGGAGTACATTCAGTTCAAGCGGTATGCGGGCAAGCACGTCCTCTTTGT : 492148
68 : lAsnValAlaAlaTyrUnkGlyLeuAlaAlaGlnTyrPro{G} >>>> Target I : 81
||||||||||.!!||| ||||||.!!||||||||||||{|} 4302
lAsnValAlaThrTyr***GlyLeuThrAlaGlnTyrPro{G}++
492147 : CAACGTGGCCACCTACTGAGGCCTGACAGCTCAGTATCCT{G}gt............. : 492103
82 : ntron 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysAsnPheGlyValI : 95
bp {||}|||||||||||||||!!:||||||||| !! !||||||:
++{lu}LeuAsnAlaLeuGlnAspGluLeuLysProSerGlyValV
492102 : ............ag{AA}CTGAATGCATTGCAGGACGAGCTGAAGCCTTCTGGTGTCG : 487762
96 : leValLeuAlaPheProCysAsnGlnPheGlyLysGlnGluProGlyThrAsnSerGl : 114
!!||||||!.!||||||||||||||||||||||||||||||||||||! !||||||||
alValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSerGl
487761 : TCGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGGAAGAACTCAGA : 487705
115 : uIleLeuLeuGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}TyrVal : 122
|||||||! !||||||{||} 474 bp {|}||||||
uIleLeuSerGlyLeu{Ly}++ ++{s}TyrVal
487704 : GATCCTTTCTGGGCTC{AA}gt.........................ag{G}TATGTG : 487207
123 : CysProGlySerGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnG : 142
!!||||||.!!||||||||||||!:!|||||||||||||||||||||||||||||||
ArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValAsnG
487206 : CGTCCAGGTGGTGGCTTTGTCCCCAATTTTCAGCTCTTTGAGAAAGGGGATGTGAATG : 487147
143 : lyGluLysGluGlnLysValPheThrPheLeuLys >>>> Target Intron 3 : 154
||||||||||||||||||||||||||||||||||| 956 bp
lyGluLysGluGlnLysValPheThrPheLeuLys++
487146 : GAGAAAAAGAACAGAAGGTCTTTACCTTCCTGAAGgt..................... : 487109
155 : >>>> AsnSerCysProProThrSerAspLeuLeuGlySerSerSerGlnLeuPheT : 171
||||||||||||||||||||||||||||||||||||:!!|||||||||||||
++AsnSerCysProProThrSerAspLeuLeuGlySerAlaSerGlnLeuPheT
487108 : ....agAACTCCTGCCCTCCAACCTCTGATCTTTTGGGCTCAGCAAGCCAACTCTTCT : 486104
172 : rpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr : 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyPr
486103 : GGGAGCCCATGAAGGTCCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCC : 486047
191 : oAspGlyValProValMetHisTrpPheHisGlnAlaProValSerThrValLysSer : 209
|||||||||||||||||||!.!|||||||||:!!||||||||||||||||||||||||
oAspGlyValProValMetArgTrpPheHisLysAlaProValSerThrValLysSer
486046 : TGATGGAGTCCCTGTCATGCGCTGGTTCCACAAGGCTCCCGTCAGCACGGTCAAGTCA : 485990
210 : AspIleLeuGluTyrLeuLysGlnPheAsnThr : 220
|||||||||||||||||||||||||||!!.|||
AspIleLeuGluTyrLeuLysGlnPheLysThr
485989 : GACATCTTGGAGTACCTGAAACAGTTCAAAACC : 485955
vulgar: SPP00000038_2.0 28 220 . gi|472269128|gb|KB715529.1| 492262 485954 - 902 M 52 156 S 0 1 5 0 2 I 0 4298 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 470 3 0 2 S 1 1 M 33 99 5 0 2 I 0 952 3 0 2 M 67 201
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local gene 485955 492262 902 - . gene_id 1 ; sequence SPP00000038_2.0 ; gene_orientation +
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 492106 492262 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 492106 492262 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 492104 492105 . - . intron_id 1 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 487804 492105 . - . intron_id 1
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 487804 487805 . - . intron_id 0 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 487686 487803 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 487686 487803 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 487684 487685 . - . intron_id 2 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 487212 487685 . - . intron_id 2
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 487212 487213 . - . intron_id 1 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 487112 487211 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 487112 487211 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 487110 487111 . - . intron_id 3 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 486156 487111 . - . intron_id 3
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 486156 486157 . - . intron_id 2 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 485955 486155 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 485955 486155 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local similarity 485955 492262 902 - . alignment_id 1 ; Query SPP00000038_2.0 ; Align 492263 29 156 ; Align 487802 82 114 ; Align 487211 121 99 ; Align 486156 154 201
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis