Command line: [exonerate -m p2g --showtargetgff -q ./Gpx5.fa -t Gpx5.carpeta/genomic.fa]
Hostname: [ws116052]
C4 Alignment:
------------
Query: SPP00000036_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Human (Homo sapiens)
Target: gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 953
Query range: 0 -> 221
Target range: 517325 -> 525078
1 : MetThrThrGlnLeuArgValValHisLeuLeuProLeuLeuLeuAlaCysPheValG : 20
||||||.!!|||||||||!.! !:!!|||:!!||||||||||||!.! !!|||..!|
MetThrAlaGlnLeuArgAlaSerTyrLeuValProLeuLeuLeuValSerPheThrG
517326 : ATGACTGCACAGTTAAGGGCCTCTTACCTTGTTCCTCTTCTGCTAGTCAGCTTTACAC : 517383
21 : lnThrSerProLysGlnGluLysMetLys >>>> Target Intron 1 >>>> : 30
|||||!:! !!|||! |||||||||||| 2810 bp
lnThrAsnAlaLysProGluLysMetLys++ ++
517384 : AGACAAATGCCAAGCCTGAGAAGATGAAGgt.........................ag : 520221
31 : MetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleAlaLeuA : 49
|||||||||:!!||||||! !|||||||||||||||||||||||||||:!!.!!||||
MetAspCysTyrLysAspValLysGlyThrIleTyrAspTyrGluAlaLeuThrLeuA
520222 : ATGGATTGCTACAAAGATGTGAAAGGCACAATCTATGACTATGAAGCCCTCACTCTGA : 520280
50 : snLysAsnGluTyrValSerPheLysGlnTyrValGlyLysHisIleLeuPheValAs : 68
|| !!!.|||:!!:!!..!||||||!:!|||!.!||||||! !:!!|||||||||||
snGlyLysGluHisIleGlnPheLysArgTyrAlaGlyLysProValLeuPheValAs
520281 : ATGGAAAGGAGCACATTCAGTTCAAGCGGTATGCGGGCAAGCCCGTCCTCTTTGTCAA : 520337
69 : nValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G} >>>> Target Intr : 81
|||||||||||||||||||||||||||||||||||||{|} 2797 bp
nValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G}++
520338 : CGTGGCCACCTACTGTGGCCTGACAGCTCAGTATCCT{G}gt................ : 520379
82 : on 2 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyLeuValV : 96
{||}||||||||||||||||||||||||||||||! ||||||||||
++{lu}LeuAsnAlaLeuGlnGluGluLeuLysProLeuGlyLeuValV
520380 : .........ag{AA}CTGAATGCACTTCAGGAGGAGCTGAAGCCCTTGGGCCTGGTTG : 523218
97 : alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLysGluIl : 115
||||||||||||||||||||||||||||||||||||||||||||!!:|||..!|||||
alLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyGluAsnSerGluIl
523219 : TGTTGGGCTTTCCCTGCAACCAGTTCGGAAAGCAGGAACCAGGAGAGAACTCAGAGAT : 523275
116 : eLeuProGlyLeu{Ly} >>>> Target Intron 3 >>>> {s}TyrValArg : 123
|||||||||||||{||} 415 bp {|}|||||||||
eLeuProGlyLeu{Ly}++ ++{s}TyrValArg
523276 : TCTTCCGGGACTG{AA}gt.........................ag{G}TATGTCCGT : 523714
124 : ProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGlyAspValAsnGlyG : 143
|||||| !!|||!:!||||||!:!||||||||||||||||||||||||||||||||||
ProGlyArgGlyTyrValProAsnPheGlnLeuPheGluLysGlyAspValAsnGlyG
523715 : CCAGGGAGAGGATACGTACCCAACTTCCAGCTCTTTGAGAAAGGGGATGTGAATGGCG : 523774
144 : luLysGluGlnLysValPheSerPheLeuLys >>>> Target Intron 4 >>> : 154
||||||||||||||||||||!!!||||||||| 1068 bp
luLysGluGlnLysValPheThrPheLeuLys++
523775 : AGAAGGAACAGAAGGTCTTCACCTTCTTGAAGgt........................ : 523809
155 : > HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleSerTrpA : 172
! !|||||||||||||||||||||:!!|||||| !|||!:! !||||||||||
++LeuSerCysProHisProSerGluValLeuGlyLeuPheArgHisIleSerTrpA
523810 : .agCTCTCCTGCCCTCACCCCTCTGAGGTTCTGGGCTTATTCAGACATATATCCTGGG : 524929
173 : spProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs : 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
spProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGlyProAs
524930 : ATCCCGTAAAGGTCCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCTGA : 524986
192 : pGlyIleProValMetArgTrpSerHisArgAlaThrValSerSerValLysThrAsp : 210
||||:!!|||||||||||||||! !||||||.!! !!:!!|||!!!||||||:!!|||
pGlyValProValMetArgTrpPheHisArgThrProIleSerThrValLysSerAsp
524987 : TGGAGTCCCTGTCATGCGCTGGTTCCACCGGACTCCCATCAGCACGGTCAAGTCAGAC : 525043
211 : IleLeuAlaTyrLeuLysGlnPheLysThrLys : 221
||||||! !||||||||||||||||||!:!|||
IleLeuGluTyrLeuLysGlnPheLysSerLys
525044 : ATCCTGGAGTACCTGAAACAGTTCAAAAGTAAA : 525078
vulgar: SPP00000036_2.0 0 221 . gi|472269128|gb|KB715529.1| 517325 525078 + 953 M 29 87 5 0 2 I 0 2806 3 0 2 M 51 153 S 0 1 5 0 2 I 0 2793 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 411 3 0 2 S 1 1 M 33 99 5 0 2 I 0 1064 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local gene 517326 525078 953 + . gene_id 1 ; sequence SPP00000036_2.0 ; gene_orientation +
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 517326 517412 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 517326 517412 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 517413 517414 . + . intron_id 1 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 517413 520222 . + . intron_id 1
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 520221 520222 . + . intron_id 0 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 520223 520376 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 520223 520376 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 520377 520378 . + . intron_id 2 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 520377 523173 . + . intron_id 2
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 523172 523173 . + . intron_id 1 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 523174 523291 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 523174 523291 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 523292 523293 . + . intron_id 3 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 523292 523706 . + . intron_id 3
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 523705 523706 . + . intron_id 2 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 523707 523806 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 523707 523806 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 523807 523808 . + . intron_id 4 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 523807 524874 . + . intron_id 4
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 524873 524874 . + . intron_id 3 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 524875 525078 . + .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 524875 525078 . + . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local similarity 517326 525078 953 + . alignment_id 1 ; Query SPP00000036_2.0 ; Align 517326 1 87 ; Align 520223 30 153 ; Align 523176 82 114 ; Align 523708 121 99 ; Align 524875 154 204
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000036_2.0 # Protein # Glutathione peroxidase 5 (GPx5) # Human (Homo sapiens)
Target: gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 818
Query range: 27 -> 221
Target range: 492265 -> 485951
28 : MetLysMetAspCysHisLysAspGluLysGlyThrIleTyrAspTyrGluAlaIleA : 47
.!.:!!|||||||||:!!|||! ! !! !||||||||||||!!:|||! !|||:!!.
PheGlnMetAspCysTyrLysGlyValThrGlyThrIleTyrGluTyrGlyAlaLeuT
492265 : TTCCAGATGGATTGCTACAAAGGGGTGACGGGCACCATCTATGAGTACGGAGCCCTCA : 492208
48 : laLeuAsnLysAsnGluTyrValSerPheLysGlnTyrValGlyLysHisIleLeuPh : 66
!!||||||:!!.!.||||||:!!..!||||||!:!|||!.!|||||||||:!!|||||
hrLeuAsnGluGluGluTyrIleGlnPheLysArgTyrAlaGlyLysHisValLeuPh
492207 : CCCTCAATGAAGAGGAGTACATTCAGTTCAAGCGGTATGCGGGCAAGCACGTCCTCTT : 492151
67 : eValAsnValAlaThrTyrCysGlyLeuThrAlaGlnTyrPro{G} >>>> Targe : 81
|||||||||||||||||||!! |||||||||||||||||||||{|} 4
eValAsnValAlaThrTyr***GlyLeuThrAlaGlnTyrPro{G}++
492150 : TGTCAACGTGGCCACCTACTGAGGCCTGACAGCTCAGTATCCT{G}gt.......... : 492103
82 : t Intron 1 >>>> {lu}LeuAsnAlaLeuGlnGluGluLeuLysProTyrGlyL : 94
302 bp {||}|||||||||||||||!!:||||||||||||! !|||:
++{lu}LeuAsnAlaLeuGlnAspGluLeuLysProSerGlyV
492102 : ...............ag{AA}CTGAATGCATTGCAGGACGAGCTGAAGCCTTCTGGTG : 487765
95 : euValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyAspAsnLy : 113
!!|||||||||||||||||||||||||||||||||||||||||||||||| ! |||..
alValValLeuGlyPheProCysAsnGlnPheGlyLysGlnGluProGlyLysAsnSe
487764 : TCGTCGTGCTGGGCTTTCCCTGCAACCAGTTTGGAAAACAAGAACCAGGGAAGAACTC : 487708
114 : sGluIleLeuProGlyLeu{Ly} >>>> Target Intron 2 >>>> {s}Tyr : 121
!||||||||| !!||||||{||} 474 bp {|}|||
rGluIleLeuSerGlyLeu{Ly}++ ++{s}Tyr
487707 : AGAGATCCTTTCTGGGCTC{AA}gt.........................ag{G}TAT : 487210
122 : ValArgProGlyGlyGlyPheValProSerPheGlnLeuPheGluLysGlyAspValA : 141
|||||||||||||||||||||||||||!:!||||||||||||||||||||||||||||
ValArgProGlyGlyGlyPheValProAsnPheGlnLeuPheGluLysGlyAspValA
487209 : GTGCGTCCAGGTGGTGGCTTTGTCCCCAATTTTCAGCTCTTTGAGAAAGGGGATGTGA : 487150
142 : snGlyGluLysGluGlnLysValPheSerPheLeuLys >>>> Target Intron : 154
||||||||||||||||||||||||||!!!||||||||| 956 bp
snGlyGluLysGluGlnLysValPheThrPheLeuLys++
487149 : ATGGAGAAAAAGAACAGAAGGTCTTTACCTTCCTGAAGgt.................. : 487109
155 : 3 >>>> HisSerCysProHisProSerGluIleLeuGlyThrPheLysSerIleS : 170
:!!|||||||||! !!|||!!::!!||||||:!! !....!:!!!
++AsnSerCysProProThrSerAspLeuLeuGlySerAlaSerGlnLeuP
487108 : .......agAACTCCTGCCCTCCAACCTCTGATCTTTTGGGCTCAGCAAGCCAACTCT : 486107
171 : erTrpAspProValLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGl : 189
!|||!!:|||:!!||||||||||||||||||||||||||||||||||||||||||||
heTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPheLeuValGl
486106 : TCTGGGAGCCCATGAAGGTCCACGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGG : 486050
190 : yProAspGlyIleProValMetArgTrpSerHisArgAlaThrValSerSerValLys : 208
||||||||||:!!|||||||||||||||! !|||!:!||| !!||||||!!!||||||
yProAspGlyValProValMetArgTrpPheHisLysAlaProValSerThrValLys
486049 : GCCTGATGGAGTCCCTGTCATGCGCTGGTTCCACAAGGCTCCCGTCAGCACGGTCAAG : 485993
209 : ThrAspIleLeuAlaTyrLeuLysGlnPheLysThrLys : 221
:!!|||||||||! !|||||||||||||||||||||:!!
SerAspIleLeuGluTyrLeuLysGlnPheLysThrGlu
485992 : TCAGACATCTTGGAGTACCTGAAACAGTTCAAAACCGAG : 485952
vulgar: SPP00000036_2.0 27 221 . gi|472269128|gb|KB715529.1| 492265 485951 - 818 M 53 159 S 0 1 5 0 2 I 0 4298 3 0 2 S 1 2 M 38 114 S 0 2 5 0 2 I 0 470 3 0 2 S 1 1 M 33 99 5 0 2 I 0 952 3 0 2 M 68 204
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local gene 485952 492265 818 - . gene_id 1 ; sequence SPP00000036_2.0 ; gene_orientation +
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 492106 492265 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 492106 492265 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 492104 492105 . - . intron_id 1 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 487804 492105 . - . intron_id 1
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 487804 487805 . - . intron_id 0 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 487686 487803 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 487686 487803 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 487684 487685 . - . intron_id 2 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 487212 487685 . - . intron_id 2
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 487212 487213 . - . intron_id 1 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 487112 487211 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 487112 487211 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice5 487110 487111 . - . intron_id 3 ; splice_site "GT"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local intron 486156 487111 . - . intron_id 3
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local splice3 486156 486157 . - . intron_id 2 ; splice_site "AG"
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local cds 485952 486155 . - .
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local exon 485952 486155 . - . insertions 0 ; deletions 0
gi|472269128|gb|KB715529.1| exonerate:protein2genome:local similarity 485952 492265 818 - . alignment_id 1 ; Query SPP00000036_2.0 ; Align 492266 28 159 ; Align 487802 82 114 ; Align 487211 121 99 ; Align 486156 154 204
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis