Command line: [exonerate -m p2g --showtargetgff -q ./Gpx4.fa -t Gpx4.carpeta/genomic.fa]
Hostname: [ws116052]

C4 Alignment:
------------
         Query: SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human (Homo sapiens)
        Target: gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01241, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 961
   Query range: 0 -> 196
  Target range: 570735 -> 572906

      1 : MetSerLeuGlyArgLeuCysArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA :     20
          |||!:!|||.!!||||||! !|||||||||||||||||||||||||||||||||||||
          MetAsnLeuSerArgLeuTyrArgLeuLeuLysProAlaLeuLeuCysGlyAlaLeuA
 570736 : ATGAACCTCAGCCGCCTGTACCGCTTGCTGAAGCCTGCGCTGCTGTGCGGGGCCCTGG : 570793

     21 : laAlaProGlyLeuAlaGlyThrMet  >>>> Target Intron 1 >>>>  Cys :     29
          |||||||||||||||||.!!||||||            944 bp           |||
          laAlaProGlyLeuAlaSerThrMet++                         ++Cys
 570794 : CCGCGCCGGGTCTGGCCAGCACCATGgt.........................agTGC : 571764

     30 : AlaSerArgAspAspTrpArgCysAlaArgSerMetHisGluPheSerAlaLysAspI :     49
          |||||||||||||||||||||||||||!:!||||||||||||||||||||||||||||
          AlaSerArgAspAspTrpArgCysAlaGlnSerMetHisGluPheSerAlaLysAspI
 571765 : GCGTCCCGAGACGACTGGCGCTGTGCTCAGTCTATGCACGAGTTCTCCGCCAAGGACA : 571824

     50 : leAspGlyHisMetValAsnLeuAspLysTyr{Ar}  >>>> Target Intron 2 :     60
          ||||||||  !|||||||||||||||||||||{||}            83 bp     
          leAspGlySerMetValAsnLeuAspLysTyr{Ar}++                    
 571825 : TCGATGGAAGCATGGTTAACCTGGACAAGTAC{CG}gt.................... : 571861

     61 :  >>>>  {g}GlyPheValCysIleValThrAsnValAlaSerGlnUnkGlyLysThr :     76
                 {|}||||||||||||||||||||||||||||||||||||   |||||||||
               ++{g}GlyPheValCysIleValThrAsnValAlaSerGln***GlyLysThr
 571862 : .....ag{G}GGCTTCGTGTGCATCGTCACCAACGTGGCCTCGCAATGAGGCAAAACA : 571988

     77 : GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgTyrAlaGluCysGlyLeuA :     96
          |||||||||||||||||||||||||||||||||||||||!:!||||||||||||||||
          GluValAsnTyrThrGlnLeuValAspLeuHisAlaArgPheAlaGluCysGlyLeuA
 571989 : GAAGTAAACTACACTCAGCTTGTCGACCTGCACGCCCGATTCGCTGAGTGCGGTTTAC : 572048

     97 : rgIleLeuAlaPheProCysAsnGlnPheGlyLysGln  >>>> Target Intron :    109
          ||||||||||||||||||||||||||||||||!:!|||            114 bp  
          rgIleLeuAlaPheProCysAsnGlnPheGlyArgGln++                  
 572049 : GGATCCTGGCCTTCCCTTGCAACCAGTTCGGGAGGCAGgt.................. : 572089

    110 :  3 >>>>  GluProGlySerAsnGluGluIleLysGluPheAlaAlaGlyTyrAsnV :    125
                   |||||||||||||||! !|||||||||||||||||||||||||||||||
                 ++GluProGlySerAsnAlaGluIleLysGluPheAlaAlaGlyTyrAsnV
 572090 : .......agGAGCCAGGGAGTAATGCGGAGATCAAAGAGTTCGCTGCTGGCTATAATG : 572249

    126 : alLysPheAspMetPheSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr :    144
          ||||||||||||||!:!|||||||||||||||||||||||||||||||||||||||||
          alLysPheAspMetTyrSerLysIleCysValAsnGlyAspAspAlaHisProLeuTr
 572250 : TCAAATTCGATATGTACAGCAAGATCTGTGTGAACGGAGACGATGCTCACCCGCTGTG : 572306

    145 : pLysTrpMetLysIleGlnProLysGlyLysGlyIleLeuGly{As}  >>>> Targ :    159
          |||||||||||||:!!||||||||||||!:!||||||||||||{||}           
          pLysTrpMetLysValGlnProLysGlyArgGlyIleLeuGly{As}++         
 572307 : GAAGTGGATGAAAGTCCAGCCCAAGGGCAGGGGCATCCTGGGA{AA}gt......... : 572355

    160 : et Intron 4 >>>>  {n}AlaIleLysTrpAsnPheThrLys  >>>> Target :    168
           117 bp           {|}||||||||||||||||||||||||            2
                          ++{n}AlaIleLysTrpAsnPheThrLys++           
 572356 : ................ag{T}GCCATCAAATGGAATTTCACCAAGgt........... : 572497

    169 :  Intron 5 >>>>  PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly :    181
          46 bp           ||||||||||||||||||||||||||||||||||||||||||
                        ++PheLeuIleAspLysAsnGlyCysValValLysArgTyrGly
 572498 : ..............agTTCCTCATTGACAAGAACGGCTGTGTGGTGAAGCGTTATGGT : 572780

    182 : ProMetGluGluProLeu  >>>> Target Intron 6 >>>>  ValIleGluLy :    191
          ||||||||||||||||||            79 bp            |||||||||||
          ProMetGluGluProLeu++                         ++ValIleGluLy
 572781 : CCCATGGAAGAGCCCCTGgt.........................agGTAATAGAGAA : 572889

    192 : sAspLeuProHisTyr :    196
          ||||||||||  !|||
          sAspLeuProCysTyr
 572890 : GGACTTGCCCTGCTAC : 572906

vulgar: SPP00000026_2.0 0 196 . gi|472268710|gb|KB715947.1| 570735 572906 + 961 M 28 84 5 0 2 I 0 940 3 0 2 M 31 93 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 48 144 5 0 2 I 0 110 3 0 2 M 50 150 S 0 2 5 0 2 I 0 113 3 0 2 S 1 1 M 8 24 5 0 2 I 0 242 3 0 2 M 20 60 5 0 2 I 0 75 3 0 2 M 9 27
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	gene	570736	572906	961	+	.	gene_id 1 ; sequence SPP00000026_2.0 ; gene_orientation +
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	570736	570819	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	570736	570819	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	570820	570821	.	+	.	intron_id 1 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	570820	571763	.	+	.	intron_id 1
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	571762	571763	.	+	.	intron_id 0 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	571764	571858	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	571764	571858	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	571859	571860	.	+	.	intron_id 2 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	571859	571941	.	+	.	intron_id 2
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	571940	571941	.	+	.	intron_id 1 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	571942	572086	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	571942	572086	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	572087	572088	.	+	.	intron_id 3 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	572087	572200	.	+	.	intron_id 3
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	572199	572200	.	+	.	intron_id 2 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	572201	572352	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	572201	572352	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	572353	572354	.	+	.	intron_id 4 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	572353	572469	.	+	.	intron_id 4
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	572468	572469	.	+	.	intron_id 3 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	572470	572494	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	572470	572494	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	572495	572496	.	+	.	intron_id 5 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	572495	572740	.	+	.	intron_id 5
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	572739	572740	.	+	.	intron_id 4 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	572741	572800	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	572741	572800	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice5	572801	572802	.	+	.	intron_id 6 ; splice_site "GT"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	intron	572801	572879	.	+	.	intron_id 6
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	splice3	572878	572879	.	+	.	intron_id 5 ; splice_site "AG"
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	cds	572880	572906	.	+	.	
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	exon	572880	572906	.	+	.	insertions 0 ; deletions 0
gi|472268710|gb|KB715947.1|	exonerate:protein2genome:local	similarity	570736	572906	961	+	.	alignment_id 1 ; Query SPP00000026_2.0 ; Align 570736 1 84 ; Align 571764 29 93 ; Align 571943 61 144 ; Align 572201 109 150 ; Align 572471 160 24 ; Align 572741 168 60 ; Align 572880 188 27
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis