TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000026_2.0 # Protein # Glutathione peroxidase 4 (GPx4) # Human (Homo sapiens) (197 letters) Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno me.fa 16,710 sequences; 3,156,886,159 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 183 2e-59 gi|472269405|gb|KB715284.1| Leptonychotes weddellii isolate WS11... 132 8e-30 gi|472268596|gb|KB716061.1| Leptonychotes weddellii isolate WS11... 95 9e-28 gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 81 3e-14 gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 70 5e-11 gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 61 4e-08 gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 60 9e-08 gi|472268783|gb|KB715874.1| Leptonychotes weddellii isolate WS11... 36 2e-05 gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 46 0.001 gi|472269970|gb|KB714719.1| Leptonychotes weddellii isolate WS11... 45 0.003 gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 44 0.004 gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11... 41 0.033 gi|472268341|gb|KB716316.1| Leptonychotes weddellii isolate WS11... 33 6.9 >gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01241, whole genome shotgun sequence Length = 781753 Score = 183 bits (465), Expect(2) = 2e-59 Identities = 92/138 (66%), Positives = 98/138 (71%), Gaps = 38/138 (27%) Frame = +2 Query: 59 YRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQ---------- 108 +RGFVCIVTNVASQ GKTEVNYTQLVDLHAR+AECGLRILAFPCNQFG+Q Sbjct: 571937 FRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQFGRQVRGWLCPWLC 572116 Query: 109 ----------------------------EPGSNEEIKEFAAGYNVKFDMFSKICVNGDDA 140 EPGSN EIKEFAAGYNVKFDM+SKICVNGDDA Sbjct: 572117 PRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEFAAGYNVKFDMYSKICVNGDDA 572296 Query: 141 HPLWKWMKIQPKGKGILG 158 HPLWKWMK+QPKG+GILG Sbjct: 572297 HPLWKWMKVQPKGRGILG 572350 Score = 69.3 bits (168), Expect(2) = 2e-59 Identities = 30/32 (93%), Positives = 31/32 (96%) Frame = +3 Query: 29 CASRDDWRCARSMHEFSAKDIDGHMVNLDKYR 60 CASRDDWRCA+SMHEFSAKDIDG MVNLDKYR Sbjct: 571764 CASRDDWRCAQSMHEFSAKDIDGSMVNLDKYR 571859 Score = 48.9 bits (115), Expect = 2e-04 Identities = 21/22 (95%), Positives = 22/22 (100%) Frame = +2 Query: 167 KFLIDKNGCVVKRYGPMEEPLV 188 +FLIDKNGCVVKRYGPMEEPLV Sbjct: 572738 QFLIDKNGCVVKRYGPMEEPLV 572803 >gi|472269405|gb|KB715284.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00578, whole genome shotgun sequence Length = 1301906 Score = 132 bits (333), Expect = 8e-30 Identities = 74/149 (49%), Positives = 90/149 (60%) Frame = -3 Query: 28 MCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLH 87 +C S + W CA SMHE SA+DI G ++NLDK+ GFVCI+TNVASQ K T L Sbjct: 744123 VCTSWEVWHCAHSMHELSARDIKGSIINLDKHWGFVCIMTNVASQ*DKQM*--TILG*PA 743950 Query: 88 ARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWM 147 R + FP +P EFAAGYN+K M + +C NGD+ H LWKW+ Sbjct: 743949 CRIS*LIFTDPGFPLQVVQGAKPRDYCRDYEFAAGYNIKLCMCN-VCENGDNDHLLWKWI 743773 Query: 148 KIQPKGKGILGNAIKWNFTKFLIDKNGCV 176 K+QPKG+ IL N KWNFTKF IDKN V Sbjct: 743772 KVQPKGRRILENTTKWNFTKFFIDKNSSV 743686 >gi|472268596|gb|KB716061.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01355, whole genome shotgun sequence Length = 634616 Score = 95.1 bits (235), Expect(3) = 9e-28 Identities = 49/96 (51%), Positives = 62/96 (64%) Frame = +1 Query: 75 KTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKIC 134 +T+ N T+L+D A YAE G LAFPC+ +Q+PGSN ++ + A G VKF SKI Sbjct: 593641 QTDTNCTKLLDPQAPYAESGSWSLAFPCDHPERQQPGSNVQMGQSADGSKVKFHEHSKI* 593820 Query: 135 VNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLI 170 V + HPLWK M+ QPKG + GNAIKW FTK I Sbjct: 593821 VTREVTHPLWKGMEAQPKGWSMQGNAIKWTFTKIHI 593928 Score = 43.9 bits (102), Expect(3) = 9e-28 Identities = 25/49 (51%), Positives = 29/49 (59%) Frame = +2 Query: 27 TMCASRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGK 75 TM S D CA +H+FSAKDI G M NL + + CIVTN Q GK Sbjct: 593504 TM*VSSVDGHCAHPVHQFSAKDIGGDMFNL--HNLYFCIVTNRP*QRGK 593644 Score = 28.1 bits (61), Expect(3) = 9e-28 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = +3 Query: 175 CVVKRYGPMEEPLVIEKDLP 194 CVV R P E PLVI+K+LP Sbjct: 593940 CVVTR*CPTEGPLVIKKELP 593999 >gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00246, whole genome shotgun sequence Length = 1829979 Score = 81.3 bits (199), Expect = 3e-14 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 1/86 (1%) Frame = +2 Query: 63 VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-A 121 V +V NVAS+ G T+ +Y L L +LAFPCNQFG+QEP +N+EI+ FA Sbjct: 1334972 VSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIESFARR 1335151 Query: 122 GYNVKFDMFSKICVNGDDAHPLWKWM 147 Y V F MFSK+ V G AHP +K++ Sbjct: 1335152 TYGVSFPMFSKVAVTGTGAHPAFKYL 1335229 >gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00377, whole genome shotgun sequence Length = 1354867 Score = 70.5 bits (171), Expect = 5e-11 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%) Frame = +3 Query: 63 VCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAA- 121 V +V NVAS T+ NY L +LH + +LAFPCNQFG+ EP ++E+ FA Sbjct: 621921 VALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARN 622100 Query: 122 GYNVKFDMFSKICVNGDDAHPLWKWM 147 Y V F +F KI + G +A P ++++ Sbjct: 622101 NYGVTFPIFHKIKILGSEADPAFRFL 622178 >gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00974, whole genome shotgun sequence Length = 858563 Score = 60.8 bits (146), Expect = 4e-08 Identities = 31/75 (41%), Positives = 46/75 (61%) Frame = +1 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRI 97 A+S ++ SA +DG V+ + +RG ++ NVAS G T ++TQL +L R+ L + Sbjct: 331960 AKSFYDLSATSLDGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRFPR-RLVV 332136 Query: 98 LAFPCNQFGKQEPGS 112 L FPCNQFG Q G+ Sbjct: 332137 LGFPCNQFGHQVRGA 332181 Score = 37.7 bits (86), Expect = 0.37 Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 29/145 (20%) Frame = +2 Query: 78 VNYTQLVDLHARYAECGLRILAFPCNQ------FGKQEPGSNEEIKEF------AAGYNV 125 V TQ + R E L IL FP F E NEEI G+ Sbjct: 334397 VEATQKRMILGREGERFLWILHFPLPSSMLFVFFLP*ENCQNEEILNSLKYVRPGGGFQP 334576 Query: 126 KFDMFSKICVNGDDAHPLWKWMK------------IQPKGKGILGNAIK-----WNFTKF 168 F + K VNG + HP++ ++K + K I+ + ++ WNF KF Sbjct: 334577 TFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKF 334756 Query: 169 LIDKNGCVVKRYGPMEEPLVIEKDL 193 LI G +RY + + IE D+ Sbjct: 334757 LIGPEGEPFRRYSRTFQTINIEPDI 334831 >gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold05313, whole genome shotgun sequence Length = 66686 Score = 59.7 bits (143), Expect = 9e-08 Identities = 37/91 (40%), Positives = 50/91 (54%), Gaps = 9/91 (9%) Frame = -1 Query: 27 TMCAS--------RDDWRCARSMHEFSAKDI-DGHMVNLDKYRGFVCIVTNVASQXGKTE 77 TMCA+ D RS++ FSA+ + G ++L RG V ++ NVAS G T Sbjct: 62102 TMCAAPLAAAAAVADAAAAPRSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASL*GTTV 61923 Query: 78 VNYTQLVDLHARYAECGLRILAFPCNQFGKQ 108 +YTQ+ +L R GL +L FPCNQFG Q Sbjct: 61922 RDYTQMNELQRRLGPRGLVVLGFPCNQFGHQ 61830 Score = 48.1 bits (113), Expect = 3e-04 Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 23/115 (20%) Frame = -1 Query: 102 CNQFGKQEPGSNEEIKEF------AAGYNVKFDMFSKICVNGDDAHPLWKWMK------- 148 C+ F QE NEEI G+ F +F K VNG AHPL+ +++ Sbjct: 61628 CSPF-PQENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLRESLPAPS 61452 Query: 149 -------IQPK---GKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 193 PK + N I WNF KFL+ +G V+RY + IE D+ Sbjct: 61451 DDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTINIEPDI 61287 >gi|472268783|gb|KB715874.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01168, whole genome shotgun sequence Length = 709232 Score = 35.8 bits (81), Expect(2) = 2e-05 Identities = 17/24 (70%), Positives = 18/24 (75%) Frame = +3 Query: 38 ARSMHEFSAKDIDGHMVNLDKYRG 61 A MHEFSAKD +G MVNLDK G Sbjct: 154650 AHCMHEFSAKDREGCMVNLDKLLG 154721 Score = 35.0 bits (79), Expect(2) = 2e-05 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = +1 Query: 62 FVCIVTNVASQXGKTEVNYTQLVDLHAR 89 F+ ++T+ A Q GKT+++ TQLVDLH R Sbjct: 154735 FMRLITHKAEQ*GKTDISNTQLVDLHVR 154818 >gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00823, whole genome shotgun sequence Length = 893735 Score = 45.8 bits (107), Expect = 0.001 Identities = 21/36 (58%), Positives = 23/36 (63%) Frame = +3 Query: 81 TQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEI 116 T+L L GL +L FPCNQFGKQEPG N EI Sbjct: 523170 TELNALQEELKPLGLVVLGFPCNQFGKQEPGENSEI 523277 Score = 42.7 bits (99), Expect = 0.011 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -2 Query: 94 GLRILAFPCNQFGKQEPGSNEEI 116 G+ +L FPCNQFGKQEPG N EI Sbjct: 487768 GVVVLGFPCNQFGKQEPGKNSEI 487700 >gi|472269970|gb|KB714719.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00013, whole genome shotgun sequence Length = 6116989 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/28 (71%), Positives = 22/28 (78%) Frame = +1 Query: 158 GNAIKWNFTKFLIDKNGCVVKRYGPMEE 185 G + + FTKFLIDKN CVVKRYGP EE Sbjct: 4999621 GLFLHFYFTKFLIDKNSCVVKRYGPTEE 4999704 >gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01312, whole genome shotgun sequence Length = 700520 Score = 44.3 bits (103), Expect = 0.004 Identities = 19/23 (82%), Positives = 19/23 (82%) Frame = +1 Query: 94 GLRILAFPCNQFGKQEPGSNEEI 116 GL IL FPCNQFGKQEPG N EI Sbjct: 633880 GLVILGFPCNQFGKQEPGENSEI 633948 >gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00202, whole genome shotgun sequence Length = 2068787 Score = 41.2 bits (95), Expect = 0.033 Identities = 35/100 (35%), Positives = 45/100 (45%), Gaps = 6/100 (6%) Frame = -1 Query: 51 GHMVNLDKYRGFVCIVTNVASQXGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEP 110 G ++L RG V + NVAS G +YTQ+ L R GL +L F + F QE Sbjct: 965984 GEPMSLGCLRGKVLLFQNVASL*GPKVWDYTQMNQLQRRLRPQGLVVLGFRRHHFRHQEN 965805 Query: 111 GSNEEIKEF-----AAGY-NVKFDMFSKICVNGDDAHPLW 144 +EEI A G+ K VNG AHPL+ Sbjct: 965804 AKSEEILNSLEHVPARGWLQPNLSPSEKGEVNGVQAHPLF 965685 >gi|472268341|gb|KB716316.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold01610, whole genome shotgun sequence Length = 611726 Score = 33.5 bits (75), Expect = 6.9 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 Query: 108 QEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPL 143 +E G N+ I + YNV F+ F ICV +HPL Sbjct: 225212 REGGKNKSISTISFIYNVSFEKFHTICVGRQISHPL 225319 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 3,087,506,849 Number of sequences in database: 5788 Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge nome.fa.01 Posted date: Oct 18, 2013 6:11 PM Number of letters in database: 69,379,310 Number of sequences in database: 10,922 Lambda K H 0.324 0.140 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 782,978,298 Number of Sequences: 16710 Number of extensions: 11057301 Number of successful extensions: 34522 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 444 Number of HSP's successfully gapped in prelim test: 251 Number of HSP's that attempted gapping in prelim test: 32589 Number of HSP's gapped (non-prelim): 5320 length of query: 197 length of database: 1,052,295,386 effective HSP length: 125 effective length of query: 72 effective length of database: 1,050,206,636 effective search space: 75614877792 effective search space used: 75614877792 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 74 (33.1 bits)