Command line: [exonerate -m p2g --showtargetgff -q ./Gpx3.fa -t Gpx3.carpeta/genomic.fa]
Hostname: [ws101094]
C4 Alignment:
------------
Query: SPP00000021_2.0 # Protein # Glutathione peroxidase 3 (GPx3) # Human (Homo sapiens)
Target: gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold03380, whole genome shotgun sequence:[revcomp]
Model: protein2genome:local
Raw score: 354
Query range: 147 -> 224
Target range: 238545 -> 238314
148 : PheTyrThrPheLeuLysAsnSerCysProProThrSerGluLeuLeuGlyThrSerA : 167
.!!!:!:!! |||:!!|||||||||||||||||||||||||||||||||:!! !!!
LeuPheSerProLeuGlnAsnSerCysProProThrSerGluLeuLeuGlySerProG
238545 : CTCTTCTCCCCGCTGCAGAACTCCTGCCCTCCCACCTCGGAGCTCCTGGGCTCACCGG : 238488
168 : spArgLeuPheTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPh : 186
!||||||||||||||||||||||||||||||||||||||||||||||||||||||||
lyArgLeuPheTrpGluProMetLysValHisAspIleArgTrpAsnPheGluLysPh
238487 : GCCGCCTCTTCTGGGAGCCTATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTT : 238431
187 : eLeuValGlyProAspGlyIleProIleMetArgTrpHisHisArgThrThrValSer : 205
|||||||||||||||||||:!!|||||||||||||||:!!|||||||||||||||!:!
eLeuValGlyProAspGlyValProIleMetArgTrpTyrHisArgThrThrValAsn
238430 : CCTGGTGGGGCCGGACGGTGTACCCATCATGCGCTGGTACCACCGGACCACGGTCAAC : 238374
206 : AsnValLysMetAspIleLeuSerTyrMetArgArgGlnAlaAlaLeuGlyValLys : 224
!.!||||||||||||||||||:!!||||||||||||||||||||||||!.!||||||
ThrValLysMetAspIleLeuAlaTyrMetArgArgGlnAlaAlaLeuAlaValLys
238373 : ACCGTCAAGATGGACATCCTGGCTTACATGCGGCGGCAGGCGGCTCTGGCGGTCAAG : 238315
vulgar: SPP00000021_2.0 147 224 . gi|472266571|gb|KB718086.1| 238545 238314 - 354 M 77 231
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-15
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472266571|gb|KB718086.1| exonerate:protein2genome:local gene 238315 238545 354 - . gene_id 1 ; sequence SPP00000021_2.0 ; gene_orientation .
gi|472266571|gb|KB718086.1| exonerate:protein2genome:local cds 238315 238545 . - .
gi|472266571|gb|KB718086.1| exonerate:protein2genome:local exon 238315 238545 . - . insertions 0 ; deletions 0
gi|472266571|gb|KB718086.1| exonerate:protein2genome:local similarity 238315 238545 354 - . alignment_id 1 ; Query SPP00000021_2.0 ; Align 238546 148 231
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis