Command line: [exonerate -m p2g --showtargetgff -q ./Gpx2.fa -t Gpx2.carpeta/genomic.fa] Hostname: [ws101094] C4 Alignment: ------------ Query: SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) # Human (Homo sapiens) Target: gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00974, whole genome shotgun sequence Model: protein2genome:local Raw score: 980 Query range: 0 -> 190 Target range: 331947 -> 334855 1 : MetAlaPheIleAlaLysSerPheTyrAspLeuSerAlaIleSerLeuAspGlyGluL : 20 ||||||!:!||||||||||||||||||||||||||||||! !|||||||||||||||| MetAlaTyrIleAlaLysSerPheTyrAspLeuSerAlaThrSerLeuAspGlyGluL 331948 : ATGGCTTACATAGCCAAGTCCTTCTACGACCTCAGTGCCACCAGCCTGGACGGGGAGA : 332005 21 : ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe : 39 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ysValAspPheAsnThrPheArgGlyArgAlaValLeuIleGluAsnValAlaSerLe 332006 : AGGTAGATTTCAACACATTCCGAGGCAGGGCCGTGCTGATTGAGAACGTGGCCTCGCT : 332062 40 : uUnkGlyThrThrThrArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro : 58 | |||||||||!:!|||||||||||||||||||||||||||||||||||||||||| u***GlyThrThrSerArgAspPheThrGlnLeuAsnGluLeuGlnCysArgPhePro 332063 : CTGAGGCACGACCAGCCGGGACTTCACCCAGCTCAACGAGCTGCAATGCCGCTTTCCC : 332119 59 : ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln >>>> Tar : 75 |||||||||||||||||||||||||||||||||||||||||||||||| ArgArgLeuValValLeuGlyPheProCysAsnGlnPheGlyHisGln++ 332120 : AGGCGCCTGGTGGTTCTCGGCTTCCCTTGCAACCAATTTGGACATCAGgt........ : 332172 76 : get Intron 1 >>>> GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys : 87 2338 bp ||||||||||||||||||||||||||||||||||||||| ++GluAsnCysGlnAsnGluGluIleLeuAsnSerLeuLys 332173 : .................agGAGAACTGTCAGAATGAGGAGATCCTGAACAGTCTCAAG : 334544 88 : TyrValArgProGlyGlyGlyTyrGlnProThrPheThrLeuValGlnLysCysGluV : 107 |||||||||||||||||||||!:!|||||||||||||||||||||||||||||||||| TyrValArgProGlyGlyGlyPheGlnProThrPheThrLeuValGlnLysCysGluV 334545 : TATGTCCGCCCTGGGGGTGGATTCCAGCCCACCTTTACCCTTGTCCAAAAGTGTGAGG : 334604 108 : alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr : 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alAsnGlyGlnAsnGluHisProValPheAlaTyrLeuLysAspLysLeuProTyrPr 334605 : TGAATGGTCAGAACGAGCATCCTGTCTTCGCCTACCTGAAGGACAAGCTCCCCTACCC : 334661 127 : oTyrAspAspProPheSerLeuMetThrAspProLysLeuIleIleTrpSerProVal : 145 |||||||||||||||||||||||||||||||||||||!!!|||||||||||||||||| oTyrAspAspProPheSerLeuMetThrAspProLysPheIleIleTrpSerProVal 334662 : TTACGATGACCCATTTTCCCTCATGACCGATCCCAAGTTCATCATTTGGAGCCCCGTG : 334718 146 : ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP : 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ArgArgSerAspValAlaTrpAsnPheGluLysPheLeuIleGlyProGluGlyGluP 334719 : CGCCGCTCGGATGTGGCCTGGAACTTTGAGAAGTTCCTTATTGGGCCGGAGGGGGAGC : 334778 166 : roPheArgArgTyrSerArgThrPheProThrIleAsnIleGluProAspIleLysAr : 184 ||||||||||||||||||||||||||! !||||||||||||||||||||||||||||| roPheArgArgTyrSerArgThrPheGlnThrIleAsnIleGluProAspIleLysAr 334779 : CCTTCCGCCGCTACAGCCGCACCTTCCAGACCATCAACATTGAGCCTGACATCAAACG : 334835 185 : gLeuLeuLysValAlaIle : 190 ||||||||||||||||||| gLeuLeuLysValAlaIle 334836 : CCTCCTCAAAGTTGCCATA : 334855 vulgar: SPP00000019_2.0 0 190 . gi|472268977|gb|KB715680.1| 331947 334855 + 980 M 74 222 5 0 2 I 0 2334 3 0 2 M 116 348 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2013-11-15 ##type DNA # # # seqname source feature start end score strand frame attributes # gi|472268977|gb|KB715680.1| exonerate:protein2genome:local gene 331948 334855 980 + . gene_id 1 ; sequence SPP00000019_2.0 ; gene_orientation + gi|472268977|gb|KB715680.1| exonerate:protein2genome:local cds 331948 332169 . + . gi|472268977|gb|KB715680.1| exonerate:protein2genome:local exon 331948 332169 . + . insertions 0 ; deletions 0 gi|472268977|gb|KB715680.1| exonerate:protein2genome:local splice5 332170 332171 . + . intron_id 1 ; splice_site "GT" gi|472268977|gb|KB715680.1| exonerate:protein2genome:local intron 332170 334507 . + . intron_id 1 gi|472268977|gb|KB715680.1| exonerate:protein2genome:local splice3 334506 334507 . + . intron_id 0 ; splice_site "AG" gi|472268977|gb|KB715680.1| exonerate:protein2genome:local cds 334508 334855 . + . gi|472268977|gb|KB715680.1| exonerate:protein2genome:local exon 334508 334855 . + . insertions 0 ; deletions 0 gi|472268977|gb|KB715680.1| exonerate:protein2genome:local similarity 331948 334855 980 + . alignment_id 1 ; Query SPP00000019_2.0 ; Align 331948 1 222 ; Align 334508 75 348 # --- END OF GFF DUMP --- # -- completed exonerate analysis