TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000019_2.0 # Protein # Glutathione peroxidase 2 (GPx2) #
Human (Homo sapiens)
(190 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 241 1e-62
gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 182 6e-45
gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11... 92 3e-22
gi|472269799|gb|KB714890.1| Leptonychotes weddellii isolate WS11... 82 2e-14
gi|472269840|gb|KB714849.1| Leptonychotes weddellii isolate WS11... 74 6e-12
gi|472268800|gb|KB715857.1| Leptonychotes weddellii isolate WS11... 61 4e-08
gi|472269298|gb|KB715359.1| Leptonychotes weddellii isolate WS11... 59 2e-07
gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 57 5e-07
gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 56 9e-07
gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 54 6e-06
gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 53 1e-05
gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11... 52 2e-05
gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11... 49 1e-04
gi|472269981|gb|KB714708.1| Leptonychotes weddellii isolate WS11... 34 3e-04
gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 46 0.001
gi|472269918|gb|KB714771.1| Leptonychotes weddellii isolate WS11... 37 0.75
gi|472269516|gb|KB715173.1| Leptonychotes weddellii isolate WS11... 35 2.8
>gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00974, whole genome
shotgun sequence
Length = 858563
Score = 241 bits (616), Expect = 1e-62
Identities = 113/116 (97%), Positives = 114/116 (98%)
Frame = +2
Query: 75 ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 134
ENCQNEEILNSLKYVRPGGG+QPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM
Sbjct: 334508 ENCQNEEILNSLKYVRPGGGFQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLM 334687
Query: 135 TDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI 190
TDPK IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTF TINIEPDIKRLLKVAI
Sbjct: 334688 TDPKFIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKRLLKVAI 334855
Score = 144 bits (362), Expect = 3e-33
Identities = 70/74 (94%), Positives = 72/74 (97%)
Frame = +1
Query: 1 MAFIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPRR 60
MA+IAKSFYDLSA SLDGEKVDFNTFRGRAVLIENVASL GTT+RDFTQLNELQCRFPRR
Sbjct: 331948 MAYIAKSFYDLSATSLDGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRFPRR 332127
Query: 61 LVVLGFPCNQFGHQ 74
LVVLGFPCNQFGHQ
Sbjct: 332128 LVVLGFPCNQFGHQ 332169
>gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05313, whole genome
shotgun sequence
Length = 66686
Score = 182 bits (463), Expect = 6e-45
Identities = 85/126 (67%), Positives = 100/126 (79%)
Frame = -1
Query: 61 LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
L G C+ F QEN +NEEILNSLKYVRPGGG++P FTL +KCEVNG HP+FA+L+
Sbjct: 61649 LAAPGSSCSPFP-QENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLR 61473
Query: 121 DKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEP 180
+ LP P DD +LMTDPK I WSPV R+D+AWNFEKFL+GP+G P RRYSR FPTINIEP
Sbjct: 61472 ESLPAPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTINIEP 61293
Query: 181 DIKRLL 186
DI+ LL
Sbjct: 61292 DIEALL 61275
Score = 83.2 bits (204), Expect = 7e-15
Identities = 45/71 (63%), Positives = 52/71 (73%), Gaps = 2/71 (2%)
Frame = -1
Query: 6 KSFYDLSAISL-DGEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVV 63
+S Y SA L GE + + RG+ +LIENVASL GTT RD+TQ+NELQ R PR LVV
Sbjct: 62042 RSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVV 61863
Query: 64 LGFPCNQFGHQ 74
LGFPCNQFGHQ
Sbjct: 61862 LGFPCNQFGHQ 61830
>gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00202, whole genome
shotgun sequence
Length = 2068787
Score = 91.7 bits (226), Expect(3) = 3e-22
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = -1
Query: 18 GEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQEN 76
GE + RG+ +L +NVASL G D+TQ+N+LQ R P+ LVVLGF + F HQEN
Sbjct: 965984 GEPMSLGCLRGKVLLFQNVASL*GPKVWDYTQMNQLQRRLRPQGLVVLGFRRHHFRHQEN 965805
Query: 77 CQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVF 116
++EEILNSL++V G QP + +K EVNG HP+F
Sbjct: 965804 AKSEEILNSLEHVPARGWLQPNLSPSEKGEVNGVQAHPLF 965685
Score = 30.8 bits (68), Expect(3) = 3e-22
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 129 DPFSLMTDPKLIIWSPVRRSDVAWNFE 155
D +LMTDPK I + V +D+ W+FE
Sbjct: 965677 DAIALMTDPKFITRALVGCNDIVWDFE 965597
Score = 25.8 bits (55), Expect(3) = 3e-22
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 161 PEGEPFRRYSRTFPTI 176
P+G P R YSR FP I
Sbjct: 965595 PDGVPVRSYSRCFPAI 965548
>gi|472269799|gb|KB714890.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00184, whole genome
shotgun sequence
Length = 2053070
Score = 81.6 bits (200), Expect = 2e-14
Identities = 41/84 (48%), Positives = 53/84 (63%)
Frame = +3
Query: 103 QKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPE 162
++CEVN HP F L++ L P ++ LMT+PK WS + +VAWNFEK L+GP+
Sbjct: 438978 EECEVNSTQVHPPFTLLQEALSAPSENATVLMTNPKFNTWSRMCCHNVAWNFEKVLVGPD 439157
Query: 163 GEPFRRYSRTFPTINIEPDIKRLL 186
G P R S FP I+IEPD K LL
Sbjct: 439158 GVPVSRLS-CFPAIDIEPDTKALL 439226
Score = 54.3 bits (129), Expect = 3e-06
Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Frame = +1
Query: 28 GRAVLIENVASLXGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
G+ +LIEN A G + Q LV LGFP QF HQEN + +EILNSLK
Sbjct: 438778 GKVLLIENGAPDEGAAAVSWAQ----------GLVKLGFPGKQFRHQENAKKKEILNSLK 438927
Query: 88 YVRPGGG--YQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLII 141
Y+ P +PT TL++ + P Y + P P P P I+
Sbjct: 438928 YIPPPPK**LEPTCTLLRSVR*TVRRYTPPSPYCRRLCPPPVKMPLCS*PTPSSIL 439095
>gi|472269840|gb|KB714849.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00143, whole genome
shotgun sequence
Length = 2374980
Score = 73.6 bits (179), Expect = 6e-12
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Frame = +1
Query: 28 GRAVLIENVASLXGTTTRDFTQLNELQCRF-----PRRLVVLGFPCNQFGHQENCQNEEI 82
G+ +L + VASL T R TQ+N+LQ R P RL V P + G ++ + E
Sbjct: 1714696 GKVLLTDQVASL*RTKLRQDTQVNKLQRRLGPGPGPARLPVQAVPAS--GERQEGGDPE- 1714866
Query: 83 LNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIW 142
+L+ + P GG++P F L + V+ P L++ LP P + +L+ PKL W
Sbjct: 1714867 --TLRTIGPRGGFEPDFRLFENHLVSSAQVRPPLLRLQEALPAPREHATALLAHPKLT-W 1715037
Query: 143 SPVRRSDVAWNFEKFLIGPEG 163
S V V WN KFL GP+G
Sbjct: 1715038 SQVWGEGVGWNLGKFLKGPDG 1715100
>gi|472268800|gb|KB715857.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01151, whole genome
shotgun sequence
Length = 762929
Score = 60.8 bits (146), Expect = 4e-08
Identities = 41/102 (40%), Positives = 49/102 (48%)
Frame = +2
Query: 62 VVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKD 121
++LGFPC F QEN +N+EILNSL+YVR G PT G P +
Sbjct: 665126 IMLGFPCYHFRRQENAKNQEILNSLRYVRSRVGSSPT-----SRSWRGARTAPRLP--GE 665284
Query: 122 KLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEG 163
LP P D +L WS V S VA N EKFL+ G
Sbjct: 665285 TLPGPRDHATALGPRLTFTPWSRVCCSPVAGNLEKFLVDKNG 665410
>gi|472269298|gb|KB715359.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00653, whole genome
shotgun sequence
Length = 1047930
Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -1
Query: 58 PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFA 117
PR F C+QF H EN +N++ILNSLK++ P G++PT L +KCEV G +F
Sbjct: 661833 PR*TRCSSFLCHQFRH*ENDRNKDILNSLKHI*PSVGFEPTSVLFEKCEVKGAQVQLLFT 661654
Query: 118 YL 119
+L
Sbjct: 661653 FL 661648
Score = 46.6 bits (109), Expect = 7e-04
Identities = 25/62 (40%), Positives = 32/62 (51%)
Frame = -3
Query: 106 EVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEP 165
EV G+ LP P D +L T+PK I WSPV +DV WN ++GP+G P
Sbjct: 661696 EVRGEGRAGATPLHLPVLPAPSDCATALRTNPKFITWSPVCCNDVTWN---IMVGPDGVP 661526
Query: 166 FR 167
R
Sbjct: 661525 VR 661520
>gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00246, whole genome
shotgun sequence
Length = 1829979
Score = 57.0 bits (136), Expect = 5e-07
Identities = 36/95 (37%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +2
Query: 26 FRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILN 84
F + L+ NVAS G T + + L +LQ P VL FPCNQFG QE N+EI +
Sbjct: 1334960 FATQVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIES 1335139
Query: 85 SLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYL 119
+ Y +F + K V G HP F YL
Sbjct: 1335140 FARRT-----YGVSFPMFSKVAVTGTGAHPAFKYL 1335229
>gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00377, whole genome
shotgun sequence
Length = 1354867
Score = 56.2 bits (134), Expect = 9e-07
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +3
Query: 20 KVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQ 78
++DF F L+ NVAS T R++ L EL F P VL FPCNQFG E
Sbjct: 621891 RLDFFFFFREVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRP 622070
Query: 79 NEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122
++E+++ + Y TF + K ++ G P F +L K
Sbjct: 622071 SKEVVSFAR-----NNYGVTFPIFHKIKILGSEADPAFRFLVGK 622187
>gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01241, whole genome
shotgun sequence
Length = 781753
Score = 53.5 bits (127), Expect = 6e-06
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 33/129 (25%)
Frame = +2
Query: 25 TFRGRAVLIENVASLXGTTTRDFTQLNELQCRFPR-RLVVLGFPCNQFGHQ--------- 74
TFRG ++ NVAS G T ++TQL +L RF L +L FPCNQFG Q
Sbjct: 571934 TFRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQFGRQVRGWLCPWL 572113
Query: 75 -----------------------ENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQN 111
C +E ++ + GY F + K VNG +
Sbjct: 572114 CPRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEFAAGYNVKFDMYSKICVNGDD 572293
Query: 112 EHPVFAYLK 120
HP++ ++K
Sbjct: 572294 AHPLWKWMK 572320
>gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00823, whole genome
shotgun sequence
Length = 893735
Score = 52.8 bits (125), Expect = 1e-05
Identities = 22/48 (45%), Positives = 29/48 (60%)
Frame = +1
Query: 140 IIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
I W PV+ D+ WNFEKFL+GP+G P R+ P ++ DI LK
Sbjct: 524920 ISWDPVKVHDIRWNFEKFLVGPDGVPVMRWFHRTPISTVKSDILEYLK 525063
Score = 52.4 bits (124), Expect = 1e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = -1
Query: 133 LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLK 187
L+ + W P++ D+ WNFEKFL+GP+G P R+ P ++ DI LK
Sbjct: 486131 LLGSASQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHKAPVSTVKSDILEYLK 485967
Score = 48.5 bits (114), Expect = 2e-04
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = -2
Query: 49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQP 97
+LN LQ P +VVLGFPCNQFG QE +N EIL+ LK V G ++P
Sbjct: 487804 ELNALQDELKPSGVVVLGFPCNQFGKQEPGKNSEILSGLK*VPAGTLHRP 487655
Score = 48.5 bits (114), Expect = 2e-04
Identities = 30/51 (58%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +3
Query: 48 TQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYV---RPGGG 94
T+LN LQ P LVVLGFPCNQFG QE +N EIL LK V P GG
Sbjct: 523170 TELNALQEELKPLGLVVLGFPCNQFGKQEPGENSEILPGLK*VPAWNPRGG 523322
Score = 46.6 bits (109), Expect = 7e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -2
Query: 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
+YVRPGGG+ P F L +K +VNG+ E VF +LK
Sbjct: 487213 RYVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK 487112
Score = 45.1 bits (105), Expect = 0.002
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
+YVRPG GY P F L +K +VNG+ E VF +LK
Sbjct: 523705 RYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLK 523806
>gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02576, whole genome
shotgun sequence
Length = 370331
Score = 52.0 bits (123), Expect = 2e-05
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = -2
Query: 18 GEKVDFNTFRGRAVLIENVASLXGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQEN 76
GE + +G+ +L ENV+ L GT D+T +NELQ P+ LVVLGFP Q
Sbjct: 250903 GEPESLGSLQGKVLLFENVSLL*GTMVWDYTPINELQLNLQPQSLVVLGFPVQPV--QGI 250730
Query: 77 CQNEEILNSLKY 88
+++E LNSLK+
Sbjct: 250729 WRSQESLNSLKF 250694
>gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03380, whole genome
shotgun sequence
Length = 238997
Score = 48.9 bits (115), Expect = 1e-04
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = -3
Query: 133 LMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRR-YSRTFPTIN 177
L+ P + W P++ D+ WNFEKFL+GP+G P R Y RT T+N
Sbjct: 238503 LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPIMRWYHRT--TVN 238372
>gi|472269981|gb|KB714708.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00002, whole genome
shotgun sequence
Length = 10958939
Score = 33.9 bits (76), Expect(2) = 3e-04
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +3
Query: 103 QKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFL 158
+KCEV+G HP P PK I +PV + +AW+F+K L
Sbjct: 8483388 EKCEVDGVQAHPPLCLPPGSSACPQ*RCHCAHDQPKFITGTPV*GNGIAWSFKKLL 8483555
Score = 32.7 bits (73), Expect(2) = 3e-04
Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +2
Query: 160 GPEGEPFRR--YSRTFPTINIEPDIKRLL 186
GP+G P RR YS FPT EPDIK L+
Sbjct: 8483558 GPDGLPPRRCRYSHHFPTTATEPDIKALM 8483644
>gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01312, whole genome
shotgun sequence
Length = 700520
Score = 46.2 bits (108), Expect = 0.001
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 49 QLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLK 87
+LN LQ P LV+LGFPCNQFG QE +N EIL SLK
Sbjct: 633844 ELNALQEELEPFGLVILGFPCNQFGKQEPGENSEILPSLK 633963
Score = 43.5 bits (101), Expect = 0.006
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 87 KYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK 120
+YVRPGGG+ P F L +K +VNG+ E + +LK
Sbjct: 634428 RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLK 634529
>gi|472269918|gb|KB714771.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00065, whole genome
shotgun sequence
Length = 3469026
Score = 36.6 bits (83), Expect = 0.75
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = -3
Query: 73 HQENCQNEEILNSLKYVRPGGGYQPTFTLV 102
HQEN +N+ ILN LKYV GG +P F ++
Sbjct: 3158092 HQENTKNKGILNFLKYVPSGGRLEPNFRVL 3158003
>gi|472269516|gb|KB715173.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00467, whole genome
shotgun sequence
Length = 1416590
Score = 34.7 bits (78), Expect = 2.8
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 116 FAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRS 148
F YL+D LPY + D +S+ T P L I SP + S
Sbjct: 1203110 FCYLQDSLPYIFKDTYSVYTIPSLTISSPDKYS 1203208
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.323 0.141 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 733,356,336
Number of Sequences: 16710
Number of extensions: 12080451
Number of successful extensions: 40902
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 333
Number of HSP's that attempted gapping in prelim test: 38148
Number of HSP's gapped (non-prelim): 7333
length of query: 190
length of database: 1,052,295,386
effective HSP length: 124
effective length of query: 66
effective length of database: 1,050,223,346
effective search space: 69314740836
effective search space used: 69314740836
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 73 (32.7 bits)