TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000017_2.0 # Protein # Glutathione peroxidase 1 (GPx1) #
Human (Homo sapiens)
(203 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11... 236 6e-61
gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11... 179 1e-43
gi|472269799|gb|KB714890.1| Leptonychotes weddellii isolate WS11... 109 5e-36
gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11... 152 1e-35
gi|472269840|gb|KB714849.1| Leptonychotes weddellii isolate WS11... 108 2e-22
gi|472269298|gb|KB715359.1| Leptonychotes weddellii isolate WS11... 84 6e-15
gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11... 82 2e-14
gi|472268800|gb|KB715857.1| Leptonychotes weddellii isolate WS11... 80 5e-14
gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11... 74 4e-12
gi|472269981|gb|KB714708.1| Leptonychotes weddellii isolate WS11... 47 1e-09
gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11... 60 6e-08
gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11... 59 2e-07
gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11... 58 3e-07
gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11... 56 1e-06
gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11... 52 2e-05
gi|472269918|gb|KB714771.1| Leptonychotes weddellii isolate WS11... 42 0.021
gi|472269789|gb|KB714900.1| Leptonychotes weddellii isolate WS11... 35 2.0
gi|472269731|gb|KB714958.1| Leptonychotes weddellii isolate WS11... 35 3.4
gi|471700889|gb|APMU01161865.1| Leptonychotes weddellii contig16... 34 5.7
gi|472266612|gb|KB718045.1| Leptonychotes weddellii isolate WS11... 33 7.5
>gi|472264638|gb|KB720019.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold05313, whole genome
shotgun sequence
Length = 66686
Score = 236 bits (602), Expect = 6e-61
Identities = 115/133 (86%), Positives = 120/133 (90%)
Frame = -1
Query: 71 LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130
L G C+ F QENAKNEEILNSLKYVRPGGGFEPNF LFEKCEVNGA AHPLFAFLR
Sbjct: 61649 LAAPGSSCSPFP-QENAKNEEILNSLKYVRPGGGFEPNFTLFEKCEVNGAQAHPLFAFLR 61473
Query: 131 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 190
E+LPAPSDDATALMTDPK ITWSPVCRND+AWNFEKFLVGPDGVP+RRYSRRF TI+IEP
Sbjct: 61472 ESLPAPSDDATALMTDPKFITWSPVCRNDIAWNFEKFLVGPDGVPVRRYSRRFPTINIEP 61293
Query: 191 DIEALLSQGPSCA 203
DIEALLSQGPS A
Sbjct: 61292 DIEALLSQGPSSA 61254
Score = 139 bits (349), Expect = 1e-31
Identities = 69/74 (93%), Positives = 71/74 (95%)
Frame = -1
Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
+SVYAFSARPLAGGEP+SLGSLRGKVLLIENVASL GTTVRDYTQMNELQRRLGPRGLVV
Sbjct: 62042 RSVYAFSARPLAGGEPLSLGSLRGKVLLIENVASL*GTTVRDYTQMNELQRRLGPRGLVV 61863
Query: 74 LGFPCNQFGHQENA 87
LGFPCNQFGHQ A
Sbjct: 61862 LGFPCNQFGHQVRA 61821
>gi|472268977|gb|KB715680.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00974, whole genome
shotgun sequence
Length = 858563
Score = 179 bits (453), Expect = 1e-43
Identities = 90/146 (61%), Positives = 105/146 (71%), Gaps = 6/146 (4%)
Frame = +2
Query: 57 TQMNELQRRLGPRGLVVLGFPCNQ------FGHQENAKNEEILNSLKYVRPGGGFEPNFM 110
TQ + R G R L +L FP F EN +NEEILNSLKYVRPGGGF+P F
Sbjct: 334406 TQKRMILGREGERFLWILHFPLPSSMLFVFFLP*ENCQNEEILNSLKYVRPGGGFQPTFT 334585
Query: 111 LFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVG 170
L +KCEVNG HP+FA+L++ LP P DD +LMTDPK I WSPV R+DVAWNFEKFL+G
Sbjct: 334586 LVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVAWNFEKFLIG 334765
Query: 171 PDGVPLRRYSRRFQTIDIEPDIEALL 196
P+G P RRYSR FQTI+IEPDI+ LL
Sbjct: 334766 PEGEPFRRYSRTFQTINIEPDIKRLL 334843
Score = 84.0 bits (206), Expect = 5e-15
Identities = 46/71 (64%), Positives = 52/71 (73%)
Frame = +1
Query: 14 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVV 73
+S Y SA L GE V + RG+ +LIENVASL GTT RD+TQ+NELQ R PR LVV
Sbjct: 331963 KSFYDLSATSL-DGEKVDFNTFRGRAVLIENVASL*GTTSRDFTQLNELQCRF-PRRLVV 332136
Query: 74 LGFPCNQFGHQ 84
LGFPCNQFGHQ
Sbjct: 332137 LGFPCNQFGHQ 332169
>gi|472269799|gb|KB714890.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00184, whole genome
shotgun sequence
Length = 2053070
Score = 109 bits (272), Expect(2) = 5e-36
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = +3
Query: 108 NFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKF 167
N E+CEVN HP F L+EAL APS++AT LMT+PK TWS +C ++VAWNFEK
Sbjct: 438963 NLHTSEECEVNSTQVHPPFTLLQEALSAPSENATVLMTNPKFNTWSRMCCHNVAWNFEKV 439142
Query: 168 LVGPDGVPLRRYSRRFQTIDIEPDIEALLS 197
LVGPDGVP+ R S F IDIEPD +ALLS
Sbjct: 439143 LVGPDGVPVSRLS-CFPAIDIEPDTKALLS 439229
Score = 65.5 bits (158), Expect(2) = 5e-36
Identities = 39/70 (55%), Positives = 42/70 (60%)
Frame = +1
Query: 32 LGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEE 91
LGSL GKVLLIEN A G + Q GLV LGFP QF HQENAK +E
Sbjct: 438763 LGSLWGKVLLIENGAPDEGAAAVSWAQ-----------GLVKLGFPGKQFRHQENAKKKE 438909
Query: 92 ILNSLKYVRP 101
ILNSLKY+ P
Sbjct: 438910 ILNSLKYIPP 438939
>gi|472269781|gb|KB714908.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00202, whole genome
shotgun sequence
Length = 2068787
Score = 152 bits (383), Expect = 1e-35
Identities = 94/189 (49%), Positives = 113/189 (59%), Gaps = 3/189 (1%)
Frame = -1
Query: 18 AFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFP 77
A SARP AGGEP+SLG LRGKVLL +NVASL G V DYTQMN+LQRRL P+GLVVLGF
Sbjct: 966011 ALSARPPAGGEPMSLGCLRGKVLLFQNVASL*GPKVWDYTQMNQLQRRLRPQGLVVLGFR 965832
Query: 78 CNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPS 137
+ F HQENAK+EEILNSL++V G +PN EK EVNG AHPLF R
Sbjct: 965831 RHHFRHQENAKSEEILNSLEHVPARGWLQPNLSPSEKGEVNGVQAHPLFVLGRHRAHD-- 965658
Query: 138 DDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPL---RRYSRRFQTIDIEPDIEA 194
P + + ++ +G + + + FQ ++EPDIEA
Sbjct: 965657 ---------------RPQVHHPGSGGLQRHRLGL*DLMVCLCAATAAAFQPSNMEPDIEA 965523
Query: 195 LLSQGPSCA 203
LLS GPSCA
Sbjct: 965522 LLSWGPSCA 965496
>gi|472269840|gb|KB714849.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00143, whole genome
shotgun sequence
Length = 2374980
Score = 108 bits (270), Expect = 2e-22
Identities = 69/145 (47%), Positives = 85/145 (58%), Gaps = 4/145 (2%)
Frame = +1
Query: 33 GSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGP----RGLVVLGFPCNQFGHQENAK 88
G GKVLL + VASL T +R TQ+N+LQRRLGP L V P + G ++
Sbjct: 1714684 GPPAGKVLLTDQVASL*RTKLRQDTQVNKLQRRLGPGPGPARLPVQAVPAS--GERQEGG 1714857
Query: 89 NEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPK 148
+ E +L+ + P GGFEP+F LFE V+ A P L+EALPAP + ATAL+ PK
Sbjct: 1714858 DPE---TLRTIGPRGGFEPDFRLFENHLVSSAQVRPPLLRLQEALPAPREHATALLAHPK 1715028
Query: 149 LITWSPVCRNDVAWNFEKFLVGPDG 173
L TWS V V WN KFL GPDG
Sbjct: 1715029 L-TWSQVWGEGVGWNLGKFLKGPDG 1715100
>gi|472269298|gb|KB715359.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00653, whole genome
shotgun sequence
Length = 1047930
Score = 83.6 bits (205), Expect = 6e-15
Identities = 76/193 (39%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Frame = -3
Query: 22 RPL----AGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFP 77
RPL A G P SLG+LR DYTQMN LQ+ L P +
Sbjct: 661951 RPLCVHWAAGGPGSLGALRFPAAPCGLRCRSLRHRGLDYTQMNALQQLLVPPVQAL---- 661784
Query: 78 CNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNG---AGAHPLFAFLREALP 134
+ Q + + + + ++VR L EV G AGA PL LP
Sbjct: 661783 -RE*QEQRHPEFPQAHLTQRWVRAH--------LRPF*EVRGEGRAGATPLHL---PVLP 661640
Query: 135 APSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ----TIDIEP 190
APSD ATAL T+PK ITWSPVC NDV WN +VGPDGVP+R FQ ++ +P
Sbjct: 661639 APSDCATALRTNPKFITWSPVCCNDVTWN---IMVGPDGVPVRSPGPAFQPSTSSLTSKP 661469
Query: 191 DIEALLSQGPSCA 203
A + QGPSCA
Sbjct: 661468 CC-ARVPQGPSCA 661433
>gi|472267375|gb|KB717282.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02576, whole genome
shotgun sequence
Length = 370331
Score = 81.6 bits (200), Expect = 2e-14
Identities = 48/81 (59%), Positives = 57/81 (70%)
Frame = -2
Query: 18 AFSARPLAGGEPVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFP 77
+FSA LA GEP SLGSL+GKVLL ENV+ L GT V DYT +NELQ L P+ LVVLGFP
Sbjct: 250930 SFSAHLLACGEPESLGSLQGKVLLFENVSLL*GTMVWDYTPINELQLNLQPQSLVVLGFP 250751
Query: 78 CNQFGHQENAKNEEILNSLKY 98
Q +++E LNSLK+
Sbjct: 250750 VQPV--QGIWRSQESLNSLKF 250694
>gi|472268800|gb|KB715857.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01151, whole genome
shotgun sequence
Length = 762929
Score = 80.5 bits (197), Expect = 5e-14
Identities = 48/103 (46%), Positives = 55/103 (53%)
Frame = +2
Query: 72 VVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLRE 131
++LGFPC F QENAKN+EILNSL+YVR G P + GA E
Sbjct: 665126 IMLGFPCYHFRRQENAKNQEILNSLRYVRSRVGSSPTSRSWR-------GARTAPRLPGE 665284
Query: 132 ALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV 174
LP P D ATAL WS VC + VA N EKFLV +GV
Sbjct: 665285 TLPGPRDHATALGPRLTFTPWSRVCCSPVAGNLEKFLVDKNGV 665413
>gi|472269737|gb|KB714952.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00246, whole genome
shotgun sequence
Length = 1829979
Score = 74.3 bits (181), Expect = 4e-12
Identities = 53/142 (37%), Positives = 71/142 (50%), Gaps = 2/142 (1%)
Frame = +2
Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
+V L+ NVAS G T + Y + +LQR LGP VL FPCNQFG QE N+EI + +
Sbjct: 1334969 QVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNKEIESFAR 1335148
Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL-REALPAPSDDATALMTDPKLITWSP-V 155
+ +F +F K V G GAHP F +L RE+ PS + L +W P
Sbjct: 1335149 RT-----YGVSFPMFSKVAVTGTGAHPAFKYLIRES*SFPSSSRSWLR------SWLPGA 1335295
Query: 156 CRNDVAWNFEKFLVGPDGVPLR 177
C++ +L G G P R
Sbjct: 1335296 CKS-------HWLAG*PGAPSR 1335340
>gi|472269981|gb|KB714708.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00002, whole genome
shotgun sequence
Length = 10958939
Score = 47.0 bits (110), Expect(2) = 1e-09
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 124 PLFAFLREALPAPSDDATALMTDP 147
PLFAFL+EALPAPSDDAT LMT+P
Sbjct: 8483422 PLFAFLQEALPAPSDDATVLMTNP 8483493
Score = 45.4 bits (106), Expect = 0.002
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +3
Query: 112 FEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 168
FEKCEV+G AHP + P PK IT +PV N +AW+F+K L
Sbjct: 8483385 FEKCEVDGVQAHPPLCLPPGSSACPQ*RCHCAHDQPKFITGTPV*GNGIAWSFKKLL 8483555
Score = 38.9 bits (89), Expect(2) = 1e-09
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 170 GPDGVPLRR--YSRRFQTIDIEPDIEALLSQGPSCA 203
GPDG+P RR YS F T EPDI+AL++ G S A
Sbjct: 8483558 GPDGLPPRRCRYSHHFPTTATEPDIKALMTPGTSSA 8483665
>gi|472269606|gb|KB715083.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00377, whole genome
shotgun sequence
Length = 1354867
Score = 60.5 bits (145), Expect = 6e-08
Identities = 33/92 (35%), Positives = 49/92 (53%)
Frame = +3
Query: 38 KVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
+V L+ NVAS T R+Y + EL + GP VL FPCNQFG E ++E+++ +
Sbjct: 621918 EVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFAR 622097
Query: 98 YVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 129
+ F +F K ++ G+ A P F FL
Sbjct: 622098 -----NNYGVTFPIFHKIKILGSEADPAFRFL 622178
>gi|472269128|gb|KB715529.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00823, whole genome
shotgun sequence
Length = 893735
Score = 58.5 bits (140), Expect = 2e-07
Identities = 31/51 (60%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Frame = +3
Query: 57 TQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYV---RPGGG 104
T++N LQ L P GLVVLGFPCNQFG QE +N EIL LK V P GG
Sbjct: 523170 TELNALQEELKPLGLVVLGFPCNQFGKQEPGENSEILPGLK*VPAWNPRGG 523322
Score = 57.8 bits (138), Expect = 4e-07
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -2
Query: 58 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPG 102
++N LQ L P G+VVLGFPCNQFG QE KN EIL+ LK V G
Sbjct: 487804 ELNALQDELKPSGVVVLGFPCNQFGKQEPGKNSEILSGLK*VPAG 487670
Score = 55.8 bits (133), Expect = 1e-06
Identities = 25/49 (51%), Positives = 32/49 (65%)
Frame = +1
Query: 150 ITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQ 198
I+W PV +D+ WNFEKFLVGPDGVP+ R+ R ++ DI L Q
Sbjct: 524920 ISWDPVKVHDIRWNFEKFLVGPDGVPVMRWFHRTPISTVKSDILEYLKQ 525066
Score = 54.7 bits (130), Expect = 3e-06
Identities = 27/72 (37%), Positives = 40/72 (55%)
Frame = -1
Query: 127 AFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTI 186
+ L+ + P SD L+ + W P+ +D+ WNFEKFLVGPDGVP+ R+ +
Sbjct: 486167 SLLQNSCPPTSD----LLGSASQLFWEPMKVHDIRWNFEKFLVGPDGVPVMRWFHKAPVS 486000
Query: 187 DIEPDIEALLSQ 198
++ DI L Q
Sbjct: 485999 TVKSDILEYLKQ 485964
Score = 48.9 bits (115), Expect = 2e-04
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = -2
Query: 97 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130
+YVRPGGGF PNF LFEK +VNG +F FL+
Sbjct: 487213 RYVRPGGGFVPNFQLFEKGDVNGEKEQKVFTFLK 487112
Score = 44.7 bits (104), Expect = 0.003
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = +1
Query: 97 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 130
+YVRPG G+ PNF LFEK +VNG +F FL+
Sbjct: 523705 RYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLK 523806
>gi|472266571|gb|KB718086.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03380, whole genome
shotgun sequence
Length = 238997
Score = 58.2 bits (139), Expect = 3e-07
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = -3
Query: 125 LFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQ 184
LF+ L+ + P S+ L+ P + W P+ +D+ WNFEKFLVGPDGVP+ R+ R
Sbjct: 238545 LFSPLQNSCPPTSE----LLGSPGRLFWEPMKVHDIRWNFEKFLVGPDGVPIMRWYHRTT 238378
Query: 185 TIDIEPDIEALLSQGPSCA 203
++ DI A + + + A
Sbjct: 238377 VNTVKMDILAYMRRQAALA 238321
>gi|472268639|gb|KB716018.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01312, whole genome
shotgun sequence
Length = 700520
Score = 56.2 bits (134), Expect = 1e-06
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = +1
Query: 58 QMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLK 97
++N LQ L P GLV+LGFPCNQFG QE +N EIL SLK
Sbjct: 633844 ELNALQEELEPFGLVILGFPCNQFGKQEPGENSEILPSLK 633963
Score = 48.5 bits (114), Expect = 2e-04
Identities = 21/40 (52%), Positives = 26/40 (65%)
Frame = +3
Query: 97 KYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAP 136
+YVRPGGGF PNF LFEK +VNG + FL+ + P
Sbjct: 634428 RYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKVSAQPP 634547
>gi|472268710|gb|KB715947.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01241, whole genome
shotgun sequence
Length = 781753
Score = 52.4 bits (124), Expect = 2e-05
Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 40/147 (27%)
Frame = +2
Query: 24 LAGGEPVSLGSL--RGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF 81
+ G + SL L RG V ++ NVAS G T +YTQ+ +L R GL +L FPCNQF
Sbjct: 571898 VGGPDLASLAHLTFRGFVCIVTNVASQ*GKTEVNYTQLVDLHARFAECGLRILAFPCNQF 572077
Query: 82 GH--------------------------------------QENAKNEEILNSLKYVRPGG 103
G QE N EI
Sbjct: 572078 GRQVRGWLCPWLCPRVSRCGERGPTGAQAPPHSPPHPCLPQEPGSNAEIKEF------AA 572239
Query: 104 GFEPNFMLFEKCEVNGAGAHPLFAFLR 130
G+ F ++ K VNG AHPL+ +++
Sbjct: 572240 GYNVKFDMYSKICVNGDDAHPLWKWMK 572320
>gi|472269918|gb|KB714771.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00065, whole genome
shotgun sequence
Length = 3469026
Score = 42.0 bits (97), Expect = 0.021
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = -3
Query: 83 HQENAKNEEILNSLKYVRPGGGFEPNF 109
HQEN KN+ ILN LKYV GG EPNF
Sbjct: 3158092 HQENTKNKGILNFLKYVPSGGRLEPNF 3158012
Score = 33.5 bits (75), Expect = 7.5
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1
Query: 29 PVSLGSLRGKVLLIENVASLXGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFG--HQEN 86
PV LG L GKVLL+ENVA+L + M+ R GL V+G P N G
Sbjct: 3158247 PVCLGPL*GKVLLLENVATLRNNRLGLQPWMS--CHRASA*GLGVVGSPYN*SGIRRTPR 3158074
Query: 87 AKNEEILNSLKYVRPGGGFEP 107
K I +S+ + G G+ P
Sbjct: 3158073 TKGS*IFSSMSH--QGVGWNP 3158017
>gi|472269789|gb|KB714900.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00194, whole genome
shotgun sequence
Length = 1879746
Score = 35.4 bits (80), Expect = 2.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 121 GAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVP 175
G +P F + LP P ++A A +P L W + + + K L GP GVP
Sbjct: 1034114 GENPHHTFAHKGLPRPREEAKARKREPALTHWKSITLQILNAHLCKILSGPWGVP 1034278
>gi|472269731|gb|KB714958.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00252, whole genome
shotgun sequence
Length = 1638346
Score = 34.7 bits (78), Expect = 3.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 132 ALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL 168
AL P D A +L +P L W+P R A +F KFL
Sbjct: 1141961 ALAGPPDSAASLPQEPALQAWTPRLRGGAAMDFSKFL 1141851
>gi|471700889|gb|APMU01161865.1| Leptonychotes weddellii
contig161865, whole genome shotgun sequence
Length = 3861
Score = 33.9 bits (76), Expect = 5.7
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Frame = +3
Query: 83 HQENAKNEEILNSLKYVRPGG---------GFEPNFMLFEKCEVNGAGAHPLFAFL 129
+Q N +N +++ S +P G PNF +FE+C N AG PL FL
Sbjct: 585 NQINFQNTDVIMSHTQSKPHATPFKTQLLLGLHPNFQIFERCLHNTAGHSPLHTFL 752
>gi|472266612|gb|KB718045.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold03339, whole genome
shotgun sequence
Length = 236348
Score = 33.5 bits (75), Expect = 7.5
Identities = 43/155 (27%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Frame = +1
Query: 67 GPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLF 126
GP G + L PC+Q H+E K + I SL P GG C + A A P
Sbjct: 5755 GPGGRLQLWPPCSQKNHKELQKGKIIQPSLDVRSPVGG----------CSL--ASAQP*A 5898
Query: 127 AFLREALP-------APSDDATALMT-----DPKLITWSP----VCRNDVAWNFEKFLVG 170
A R L AP P L++WSP V R F
Sbjct: 5899 AVWRSKLTPHLWPPRAPQSPGVGWQNAPHRPPPSLVSWSPPPSSVPRGSAIPPFHSATAA 6078
Query: 171 PDG--VPLRRYSRRFQTIDIEPDIEALLSQGPSCA 203
D P R R I P + +LS+ P+ A
Sbjct: 6079 GDDWKAPERLLPRSHSAGSIRPGTQPVLSRAPNQA 6183
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.321 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 735,966,136
Number of Sequences: 16710
Number of extensions: 11576377
Number of successful extensions: 40162
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 368
Number of HSP's that attempted gapping in prelim test: 37554
Number of HSP's gapped (non-prelim): 7300
length of query: 203
length of database: 1,052,295,386
effective HSP length: 125
effective length of query: 78
effective length of database: 1,050,206,636
effective search space: 81916117608
effective search space used: 81916117608
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)