TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000016_2.0 # Protein # Iodothyronine deiodinase 3 (DI3) #
Human (Homo sapiens)
(278 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11... 527 e-148
gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11... 139 2e-31
gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11... 129 2e-28
gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11... 68 5e-10
>gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01128, whole genome
shotgun sequence
Length = 719466
Score = 527 bits (1358), Expect = e-148
Identities = 251/266 (94%), Positives = 261/266 (98%)
Frame = -3
Query: 13 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVPPDDP 72
CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEP VEL+S+GEEVPPDDP
Sbjct: 719185 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPAVELDSDGEEVPPDDP 719006
Query: 73 PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYAQGN 132
P+CVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLP+GFQ+QHILDYA+GN
Sbjct: 719005 PVCVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVLPNGFQNQHILDYARGN 718826
Query: 133 RPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYIIPQ 192
RPLVLNFGSCT PPFMARMSAF RLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPY IPQ
Sbjct: 718825 RPLVLNFGSCT*PPFMARMSAFHRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ 718646
Query: 193 HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 252
HRSLEDRVSAA+VLQQGAP C+LVLDTMANSSSSAYGAYFERLYVIQ+GTIMYQGGRGPD
Sbjct: 718645 HRSLEDRVSAAQVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVIQNGTIMYQGGRGPD 718466
Query: 253 GYQVSELRTWLERYDEQLHGARPRRV 278
GYQVSELRTWLERYDEQLHGA+PRRV
Sbjct: 718465 GYQVSELRTWLERYDEQLHGAQPRRV 718388
>gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00444, whole genome
shotgun sequence
Length = 1362633
Score = 139 bits (349), Expect = 2e-31
Identities = 80/191 (41%), Positives = 111/191 (58%), Gaps = 24/191 (12%)
Frame = +2
Query: 99 FFKQAHEGGPAPNSEVV------------------LPDGFQSQHILDYAQGNRPLVLNFG 140
F Q G APNS VV + DG + H+LD+A RPLV+NFG
Sbjct: 1059176 FHHQVKLGEDAPNSSVVHVSNSEGGDNSRNGAQVKMVDGAEC-HLLDFASPERPLVVNFG 1059352
Query: 141 SCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-VTTDS--PYIIPQHRSLE 197
S T PPF +++ AF +LV ++ DFL++YI+EAHPSDGW V DS + + +HR+ E
Sbjct: 1059353 SAT*PPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQE 1059532
Query: 198 DRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPDGY 254
DR +AA L + P C +V D M N+++ AYG FER+ ++Q I Y GG+GP Y
Sbjct: 1059533 DRCAAAHQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFCY 1059712
Query: 255 QVSELRTWLER 265
+ E+R WLE+
Sbjct: 1059713 NLQEVRRWLEK 1059745
>gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00435, whole genome
shotgun sequence
Length = 1363233
Score = 129 bits (323), Expect = 2e-28
Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 24/209 (11%)
Frame = +1
Query: 81 RLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVV------------------LPDGFQS 122
R+ T + +W D +KQ G APNS VV + DG +
Sbjct: 833800 RMLTSEGMSCIWKSFLPDAYKQVTLGEDAPNSSVVHVSYSEGGDNSRNGAQVKMVDGAK- 833976
Query: 123 QHILDYAQGNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW- 181
H+LD+A RPLV+NFGS + PPF +++S +LV ++ DFL++YI EAHPSD W
Sbjct: 833977 YHLLDFASPQRPLVVNFGSAS*PPFTSQLSYLSKLVEEFPSVADFLLVYINEAHPSDSWA 834156
Query: 182 VTTDS--PYIIPQHRSLEDRVSAA-RVLQQGA--PGCALVLDTMANSSSSAYGAYFERLY 236
V DS + + +H++ ED + A ++L+Q + P C +V D M N+++ AYG FER+
Sbjct: 834157 VPGDSSLSFEVKKHQNQEDCCATAHQLLEQFSLPPQC*VVTDHMGNNANVAYGVGFERVC 834336
Query: 237 VIQSGTIMYQGGRGPDGYQVSELRTWLER 265
++Q I Y GG+GP Y + E+ WLE+
Sbjct: 834337 IVQRQKIAYLGGKGPFYYNLQEVWHWLEK 834423
>gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00892, whole genome
shotgun sequence
Length = 851605
Score = 68.2 bits (165), Expect = 5e-10
Identities = 35/73 (47%), Positives = 48/73 (65%)
Frame = +3
Query: 178 SDGWVTTDSPYIIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYV 237
+DGW ++ I HR+L+DR+ AAR+L +P C +V+DTM N SS Y A ERLYV
Sbjct: 589107 ADGWAFKNNVNI-RTHRNLQDRLQAARLLLDRSPQCPVVVDTMENQSSQRYAALPERLYV 589283
Query: 238 IQSGTIMYQGGRG 250
+Q G I+Y+ RG
Sbjct: 589284 LQEGRILYKVTRG 589322
Score = 63.5 bits (153), Expect = 1e-08
Identities = 30/48 (62%), Positives = 34/48 (70%)
Frame = +1
Query: 131 GNRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS 178
GNRPLVLNFGSCT P F+ + F+RL + DFLIIYIEEAH S
Sbjct: 583999 GNRPLVLNFGSCT*PSFLFKFDQFKRLTEDFCSTADFLIIYIEEAHAS 584142
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.322 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,225,764,752
Number of Sequences: 16710
Number of extensions: 22412710
Number of successful extensions: 80733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 514
Number of HSP's that attempted gapping in prelim test: 74904
Number of HSP's gapped (non-prelim): 17775
length of query: 278
length of database: 1,052,295,386
effective HSP length: 130
effective length of query: 148
effective length of database: 1,050,123,086
effective search space: 155418216728
effective search space used: 155418216728
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)