Command line: [exonerate -m p2g --showtargetgff -q ./DI2.fa -t DI2.carpeta/genomic.fa]
Hostname: [ws101070]
C4 Alignment:
------------
Query: SPP00000011_2.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Human (Homo sapiens)
Target: gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00435, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 814
Query range: 109 -> 301
Target range: 833862 -> 834438
110 : MetValLysLeuGlyGluAspAlaProAsnSerSerValValHisValSerSerThrG : 129
..!|||! !||||||||||||||||||||||||||||||||||||||||||! !:!!|
GlnValThrLeuGlyGluAspAlaProAsnSerSerValValHisValSerTyrSerG
833863 : CAGGTGACATTGGGTGAAGATGCCCCCAATTCCAGTGTGGTGCATGTCTCCTATTCTG : 833920
130 : luGlyGlyAspAsnSerGlyAsnGlyThrGlnGluLysIleAlaGluGlyAlaThrCy : 148
||||||||||||||||| !!||||||.!!|||! !|||!!:!.!!!:||||||! !!
luGlyGlyAspAsnSerArgAsnGlyAlaGlnValLysMetValAspGlyAlaLysTy
833921 : AAGGAGGTGACAACAGTAGAAATGGTGCCCAGGTGAAGATGGTCGATGGAGCCAAGTA : 833977
149 : sHisLeuLeuAspPheAlaSerProGluArgProLeuValValAsnPheGlySerAla : 167
!||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||
rHisLeuLeuAspPheAlaSerProGlnArgProLeuValValAsnPheGlySerAla
833978 : CCACCTTCTTGACTTTGCCAGCCCTCAGCGCCCACTGGTGGTCAACTTTGGCTCAGCC : 834034
168 : ThrUnkProProPheThrSerGlnLeuProAlaPheArgLysLeuValGluGluPheS : 187
!:! ||||||||||||||||||||| !! !!!.!!!||||||||||||||||||
Ser***ProProPheThrSerGlnLeuSerTyrLeuSerLysLeuValGluGluPheP
834035 : AGTTGACCTCCTTTTACTAGCCAGCTGTCTTACTTGAGCAAATTGGTGGAAGAGTTCC : 834094
188 : erSerValAlaAspPheLeuLeuValTyrIleAspGluAlaHisProSerAspGlyTr : 206
!!||||||||||||||||||||||||||||||:!!||||||||||||||||||.!!||
roSerValAlaAspPheLeuLeuValTyrIleAsnGluAlaHisProSerAspSerTr
834095 : CATCAGTGGCTGACTTCCTGTTGGTCTACATTAATGAGGCTCATCCTTCAGATAGTTG : 834151
207 : pAlaIleProGlyAspSerSerLeuSerPheGluValLysLysHisGlnAsnGlnGlu : 225
||||:!:|||||||||||||||||||||||||||||||||||||||||||||||||||
pAlaValProGlyAspSerSerLeuSerPheGluValLysLysHisGlnAsnGlnGlu
834152 : GGCAGTGCCTGGTGATTCTTCTTTGTCTTTTGAAGTGAAGAAGCACCAGAACCAGGAA : 834208
226 : AspArgCysAlaAlaAlaGlnGlnLeuLeuGluArgPheSerLeuProProGlnCysA : 245
||| !!||||||.!!|||!!.||||||||||||!:!|||||||||||||||||||||
AspCysCysAlaThrAlaHisGlnLeuLeuGluGlnPheSerLeuProProGlnCys*
834209 : GACTGTTGTGCAACAGCCCACCAGCTTCTGGAGCAATTCTCCTTGCCGCCTCAGTGCT : 834268
246 : rgValValAlaAspArgMetAspAsnAsnAlaAsnIleAlaTyrGlyValAlaPheGl : 264
!!||||||.!!|||!.!|||! !||||||||||||:!!||||||||||||!.!|||||
**ValValThrAspHisMetGlyAsnAsnAlaAsnValAlaTyrGlyValGlyPheGl
834269 : GAGTTGTGACTGACCACATGGGCAATAATGCCAATGTAGCTTATGGGGTAGGCTTTGA : 834325
265 : uArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPhe : 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
uArgValCysIleValGlnArgGlnLysIleAlaTyrLeuGlyGlyLysGlyProPhe
834326 : ACGTGTGTGTATTGTGCAGAGACAGAAAATTGCTTATCTGGGAGGAAAGGGCCCTTTC : 834382
284 : SerTyrAsnLeuGlnGluValArgHisTrpLeuGluLysAsnPheSerLysArg : 301
! !|||||||||||||||||| !!||||||||||||||||||||||||||||||
TyrTyrAsnLeuGlnGluValTrpHisTrpLeuGluLysAsnPheSerLysArg
834383 : TATTACAACCTTCAAGAAGTCTGGCATTGGCTGGAGAAGAATTTCAGCAAAAGA : 834438
vulgar: SPP00000011_2.0 109 301 . gi|472269548|gb|KB715141.1| 833862 834438 + 814 M 192 576
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local gene 833863 834438 814 + . gene_id 1 ; sequence SPP00000011_2.0 ; gene_orientation .
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local cds 833863 834438 . + .
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local exon 833863 834438 . + . insertions 0 ; deletions 0
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local similarity 833863 834438 814 + . alignment_id 1 ; Query SPP00000011_2.0 ; Align 833863 110 576
# --- END OF GFF DUMP ---
#
C4 Alignment:
------------
Query: SPP00000011_2.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Human (Homo sapiens)
Target: gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00435, whole genome shotgun sequence
Model: protein2genome:local
Raw score: 179
Query range: 33 -> 75
Target range: 833742 -> 833868
34 : LeuLysHisValValLeuLeuLeuSerArgSerLysSerThrArgGlyGluTrpArgA : 53
||| !|||||||||||||||||||||!.!|||||||||||| !!|||||||||||||
LeuGlyHisValValLeuLeuLeuSerHisSerLysSerThrGlyGlyGluTrpArgA
833743 : TTGGGGCACGTGGTGCTGCTGCTGAGCCACTCCAAGTCCACGGGCGGGGAGTGGAGGC : 833800
54 : rgMetLeuThrSerGluGlyLeuArgCysValTrpLysSerPheLeuLeuAspAlaTy : 72
||||||||||||||||||||:!!!!!|||:!!|||||||||||||||! !||||||||
rgMetLeuThrSerGluGlyMetSerCysIleTrpLysSerPheLeuProAspAlaTy
833801 : GCATGCTGACCTCAGAGGGAATGAGCTGCATCTGGAAGAGCTTCCTCCCCGATGCCTA : 833857
73 : rLysGlnLeu : 75
|||||||:!!
rLysGlnVal
833858 : CAAGCAGGTG : 833868
vulgar: SPP00000011_2.0 33 75 . gi|472269548|gb|KB715141.1| 833742 833868 + 179 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local gene 833743 833868 179 + . gene_id 2 ; sequence SPP00000011_2.0 ; gene_orientation .
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local cds 833743 833868 . + .
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local exon 833743 833868 . + . insertions 0 ; deletions 0
gi|472269548|gb|KB715141.1| exonerate:protein2genome:local similarity 833743 833868 179 + . alignment_id 2 ; Query SPP00000011_2.0 ; Align 833743 34 126
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis