TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000011_2.0 # Protein # Iodothyronine deiodinase 2 (DI2) #
Human (Homo sapiens)
(309 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11... 368 e-100
gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11... 357 7e-97
gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11... 141 6e-32
gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11... 62 6e-08
gi|472268604|gb|KB716053.1| Leptonychotes weddellii isolate WS11... 36 3.4
gi|472268952|gb|KB715705.1| Leptonychotes weddellii isolate WS11... 36 3.4
gi|472268223|gb|KB716434.1| Leptonychotes weddellii isolate WS11... 35 7.7
gi|472269652|gb|KB715037.1| Leptonychotes weddellii isolate WS11... 35 7.7
>gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00435, whole genome
shotgun sequence
Length = 1363233
Score = 368 bits (945), Expect = e-100
Identities = 191/268 (71%), Positives = 202/268 (75%)
Frame = +1
Query: 34 LKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYKQLNCPPSGFSKDGHILXLVY 93
L HVVLLLS SKST GEWRRMLTSEG+ C+WKSFL DAYKQ
Sbjct: 833743 LGHVVLLLSHSKSTGGEWRRMLTSEGMSCIWKSFLPDAYKQ------------------- 833865
Query: 94 EAYKSRLLVYSHLDLWMVKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDF 153
V LGEDAPNSSVVHVS +EGGDNS NG Q K+ +GA HLLDF
Sbjct: 833866 -----------------VTLGEDAPNSSVVHVSYSEGGDNSRNGAQVKMVDGAKYHLLDF 833994
Query: 154 ASPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSS 213
ASP+RPLVVNFGSA+ PPFTSQL KLVEEF SVADFLLVYI+EAHPSD WA+PGDSS
Sbjct: 833995 ASPQRPLVVNFGSAS*PPFTSQLSYLSKLVEEFPSVADFLLVYINEAHPSDSWAVPGDSS 834174
Query: 214 LSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQK 273
LSFEVKKHQNQED CA A QLLE+FSLPPQC VV D M NNAN+AYGV FERVCIVQRQK
Sbjct: 834175 LSFEVKKHQNQEDCCATAHQLLEQFSLPPQC*VVTDHMGNNANVAYGVGFERVCIVQRQK 834354
Query: 274 IAYLGGKGPFSYNLQEVRHWLEKNFSKR 301
IAYLGGKGPF YNLQEV HWLEKNFSKR
Sbjct: 834355 IAYLGGKGPFYYNLQEVWHWLEKNFSKR 834438
>gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00444, whole genome
shotgun sequence
Length = 1362633
Score = 357 bits (915), Expect = 7e-97
Identities = 173/191 (90%), Positives = 181/191 (94%)
Frame = +2
Query: 111 VKLGEDAPNSSVVHVSSTEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATXP 170
VKLGEDAPNSSVVHVS++EGGDNS NG Q K+ +GA CHLLDFASPERPLVVNFGSAT P
Sbjct: 1059188 VKLGEDAPNSSVVHVSNSEGGDNSRNGAQVKMVDGAECHLLDFASPERPLVVNFGSAT*P 1059367
Query: 171 PFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAA 230
PFTSQLPAF KLVEEFSSVADFLLVYIDEAHPSDGWA+PGDSSLSFEVKKH+NQEDRCAA
Sbjct: 1059368 PFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCAA 1059547
Query: 231 AQQLLERFSLPPQCRVVADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEV 290
A QLLERFSLPPQC+VVADRMDNNAN+AYGVAFERVCIVQRQKIAYLGGKGPF YNLQEV
Sbjct: 1059548 AHQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFCYNLQEV 1059727
Query: 291 RHWLEKNFSKR 301
R WLEKNFSKR
Sbjct: 1059728 RRWLEKNFSKR 1059760
Score = 159 bits (402), Expect = 2e-37
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +2
Query: 1 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 60
MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEG+
Sbjct: 1050701 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGM 1050880
Query: 61 RCVWKSFLLDAYKQLNCPPSGFSKD 85
RC+WKSFLLDAYKQ++C GFS+D
Sbjct: 1050881 RCIWKSFLLDAYKQVSCSDRGFSRD 1050955
>gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01128, whole genome
shotgun sequence
Length = 719466
Score = 141 bits (355), Expect = 6e-32
Identities = 100/290 (34%), Positives = 142/290 (48%), Gaps = 5/290 (1%)
Frame = -3
Query: 12 LQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDA 71
L + P F L L D + + KH L R + + E L S+G
Sbjct: 719164 LVLFPRFLGTAFMLWLLDFLCIRKH---FLGRRRRGQPEPAVELDSDGEEV--------- 719021
Query: 72 YKQLNCPPSGFSKDGHILXL-----VYEAYKSRLLVYSHLDLWMVKLGEDAPNSSVVHVS 126
+ PP S D + L V+ K +H G APNS VV
Sbjct: 719020 --PPDDPPVCVSDDNRLCTLASLKAVWHGQKLDFFKQAHE-------GGPAPNSEVV--- 718877
Query: 127 STEGGDNSGNGTQEKIAEGATCHLLDFASPERPLVVNFGSATXPPFTSQLPAFRKLVEEF 186
NG Q + H+LD+A RPLV+NFGS T PPF +++ AF +LV ++
Sbjct: 718876 -------LPNGFQNQ-------HILDYARGNRPLVLNFGSCT*PPFMARMSAFHRLVTKY 718739
Query: 187 SSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRV 246
DFL++YI+EAHPSDGW + DS + + +H++ EDR +AAQ L + P C +
Sbjct: 718738 QRDVDFLIIYIEEAHPSDGW-VTTDS--PYSIPQHRSLEDRVSAAQVLQQG---APSCSL 718577
Query: 247 VADRMDNNANIAYGVAFERVCIVQRQKIAYLGGKGPFSYNLQEVRHWLEK 296
V D M N+++ AYG FER+ ++Q I Y GG+GP Y + E+R WLE+
Sbjct: 718576 VLDTMANSSSSAYGAYFERLYVIQNGTIMYQGGRGPDGYQVSELRTWLER 718427
>gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00892, whole genome
shotgun sequence
Length = 851605
Score = 61.6 bits (148), Expect = 6e-08
Identities = 29/59 (49%), Positives = 39/59 (66%)
Frame = +1
Query: 155 SPERPLVVNFGSATXPPFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSS 213
S RPLV+NFGS T P F + F++L E+F S ADFL++YI+EAH S +P +S
Sbjct: 583996 SGNRPLVLNFGSCT*PSFLFKFDQFKRLTEDFCSTADFLIIYIEEAHASGTERLPAPAS 584172
Score = 51.6 bits (122), Expect = 6e-05
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 203 SDGWAIPGDSSLSFEVKKHQNQEDRCAAAQQLLERFSLPPQCRVVADRMDNNANIAYGVA 262
+DGWA + + ++ H+N +DR AA+ LL+R PQC VV D M+N ++ Y
Sbjct: 589107 ADGWAFKNNVN----IRTHRNLQDRLQAARLLLDR---SPQCPVVVDTMENQSSQRYAAL 589265
Query: 263 FERVCIVQRQKIAY--LGGKGP 282
ER+ ++Q +I Y G GP
Sbjct: 589266 PERLYVLQEGRILYKVTRGTGP 589331
>gi|472268604|gb|KB716053.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01347, whole genome
shotgun sequence
Length = 715730
Score = 35.8 bits (81), Expect = 3.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 9 LITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTS-----EGLRCV 63
L + L V+F +CL ++ + S+ L K + LL R ++RG RR S +G +C
Sbjct: 546391 LTFISSLSVYFHSCLMVSFHFSLSLFKDFIYLLDRESTSRGSGRRKRRSRLPAEQGAQCA 546570
Query: 64 WKS 66
+S
Sbjct: 546571 ARS 546579
>gi|472268952|gb|KB715705.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00999, whole genome
shotgun sequence
Length = 826042
Score = 35.8 bits (81), Expect = 3.4
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 171 PFTSQLPAFRKLVEEFSSVADFLLVYIDEAHPSDGWAIPGDSSLSFEVKKHQNQEDRCAA 230
P +S P+F L + FS + DFLL + P+ + PG S + K+ + C
Sbjct: 590124 PLSSSTPSFPPLSQTFSPLPDFLLGVLS---PTKSFTSPGQSPTPYTNKRQMEKCCACPG 590294
Query: 231 AQQLLERFSLPP 242
+L SLPP
Sbjct: 590295 NIRLNRTSSLPP 590330
>gi|472268223|gb|KB716434.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01728, whole genome
shotgun sequence
Length = 546042
Score = 34.7 bits (78), Expect = 7.7
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 16 PVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGLRCVWKSFLLDAYK 73
P+FF +CL LA L+ L+ R++ + R +L GLRC WKS Y+
Sbjct: 320704 PIFFWSCLPLA*TRGEKLVAWTGLVPERTREKWADLRHVLFLTGLRCPWKSSQTQYYR 320877
>gi|472269652|gb|KB715037.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00331, whole genome
shotgun sequence
Length = 1609658
Score = 34.7 bits (78), Expect = 7.7
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = -1
Query: 23 LFLALYDSVILLKHVVLLLSRSKSTRGEWRR-MLTSEGLRCV--WKSFLLDAYKQLNCPP 79
+F + SVI H+ + SK R +WR+ LTS C+ ++ F+L + K+ NCP
Sbjct: 833999 IFETSHSSVIFRVHLKMYFGHSKDNRVKWRKSCLTSIWYNCLLHYRLFVLQSLKK-NCPF 833823
Query: 80 SGF 82
GF
Sbjct: 833822 PGF 833814
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,279,799,241
Number of Sequences: 16710
Number of extensions: 20473967
Number of successful extensions: 84254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 552
Number of HSP's that attempted gapping in prelim test: 76841
Number of HSP's gapped (non-prelim): 21672
length of query: 309
length of database: 1,052,295,386
effective HSP length: 131
effective length of query: 178
effective length of database: 1,050,106,376
effective search space: 186918934928
effective search space used: 186918934928
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)