Command line: [exonerate -m p2g --showtargetgff -q ./DI1.fa -t DI1.carpeta/genomic.fa]
Hostname: [ws101087]

C4 Alignment:
------------
         Query: SPP00000002_2.0 # Protein # Iodothyronine deiodinase 1 (DI1) # Human (Homo sapiens)
        Target: gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold scaffold00892, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1072
   Query range: 0 -> 248
  Target range: 576640 -> 591644

      1 : MetGlyLeuProGlnProGlyLeuTrpLeuLysArgLeuTrpValLeuLeuGluValA :     20
          ||||||||||||::!||||||||||||||||||||||||||||||||||||:!!||||
          MetGlyLeuProArgProGlyLeuTrpLeuLysArgLeuTrpValLeuLeuGlnValA
 576641 : ATGGGGCTGCCCAGGCCAGGGCTGTGGCTGAAGAGGCTCTGGGTCCTCTTGCAGGTGG : 576698

     21 : laValHisValValValGlyLysValLeuLeuIleLeuPheProAspArgValLysAr :     39
          |||||!!.|||!.!||||||||||||!!!|||||||||||||||!!:|||||||||!:
          laValGlnValAlaValGlyLysValPheLeuIleLeuPheProGluArgValLysGl
 576699 : CCGTGCAGGTGGCCGTGGGCAAAGTGTTCCTGATACTGTTTCCCGAGAGAGTCAAGCA : 576755

     40 : gAsnIleLeuAlaMetGlyGluLysThrGlyMetThrArgAsnProHisPheSerHis :     58
          !:!!||||||||||||..!||||||               |||||||||||||||:!!
          nHisIleLeuAlaMetAsnGluLys---------------AsnProHisPheSerTyr
 576756 : ACACATCTTGGCCATGAACGAGAAG---------------AACCCCCACTTTTCCTAT : 576797

     59 : AspAsnTrpIleProThrPhePheSerThrGlnTyrPheTrpPheValLeuLysValA :     78
          |||||||||  !|||||||||!:!|||! !||||||||||||||||||||||||||||
          AspAsnTrpAlaProThrPheTyrSerMetGlnTyrPheTrpPheValLeuLysValA
 576798 : GACAACTGGGCCCCGACCTTCTACAGCATGCAGTATTTCTGGTTTGTCCTGAAGGTCC : 576857

     79 : rgTrpGlnArgLeuGluAspThrThrGluLeuGlyGlyLeuAlaProAsnCysProVa :     97
          ||||||||||||||||||||! !||||||! !||||||||||||||||||||||||||
          rgTrpGlnArgLeuGluAspArgThrGluProGlyGlyLeuAlaProAsnCysProVa
 576858 : GATGGCAGCGACTAGAGGACAGGACTGAGCCCGGGGGCCTGGCCCCCAACTGCCCTGT : 576914

     98 : lValArgLeuSerGlyGlnArgCysAsnIleTrpGluPheMetGln{G}  >>>> Ta :    113
          |||||||||||||||||||||||||:!!||||||!!:|||||||||{|}         
          lValArgLeuSerGlyGlnArgCysHisIleTrpAspPheMetGln{G}++       
 576915 : GGTCCGGCTCTCAGGACAAAGGTGCCACATTTGGGACTTCATGCAA{G}gt....... : 576965

    114 : rget Intron 1 >>>>  {ly}AsnArgProLeuValLeuAsnPheGlySerCysT :    125
            7037 bp           {||}||||||||||||||||||||||||||||||||||
                            ++{ly}AsnArgProLeuValLeuAsnPheGlySerCysT
 576966 : ..................ag{GC}AACAGGCCACTGGTGCTGAATTTTGGAAGTTGTA : 584035

    126 : hrUnkProSerPheMetPheLysPheAspGlnPheLysArgLeuIleGluAspPheSe :    144
          ||   |||||||||:!:|||||||||||||||||||||||||||! !|||||||||!!
          hr***ProSerPheLeuPheLysPheAspGlnPheLysArgLeuThrGluAspPheCy
 584036 : CCTGACCTTCATTTCTTTTCAAATTTGACCAATTCAAGAGACTTACTGAAGACTTTTG : 584092

    145 : rSerIleAlaAspPheLeuValIleTyrIleGluGluAlaHisAlaSer{A}  >>>> :    161
          !|||! !||||||||||||:!!|||||||||||||||||||||||||||{|}      
          sSerThrAlaAspPheLeuIleIleTyrIleGluGluAlaHisAlaSer{A}++    
 584093 : CTCCACAGCAGACTTCCTCATCATTTACATCGAAGAAGCACACGCATCA{G}gt.... : 584146

    162 :  Target Intron 2 >>>>  {sp}GlyTrpAlaPheLysAsnAsnMetAspIleA :    172
               4967 bp           {||}|||||||||||||||||||||:!!:!!||||
                               ++{sp}GlyTrpAlaPheLysAsnAsnValAsnIleA
 584147 : .....................ag{AT}GGCTGGGCTTTTAAGAACAACGTGAACATCA : 589143

    173 : rgAsnHisGlnAsnLeuGlnAspArgLeuGlnAlaAlaHisLeuLeuLeuAlaArgSe :    191
          ||!.!|||::!|||||||||||||||||||||||||||!.!|||||||||! !|||||
          rgThrHisArgAsnLeuGlnAspArgLeuGlnAlaAlaArgLeuLeuLeuAspArgSe
 589144 : GGACTCACAGGAATCTCCAGGACCGCCTGCAGGCCGCCCGCTTGCTGCTGGACAGGAG : 589200

    192 : rProGlnCysProValValValAspThrMetGlnAsnGlnSerSerGlnLeuTyrAla :    210
          |||||||||||||||||||||||||||||||:!!|||||||||||||||! !||||||
          rProGlnCysProValValValAspThrMetGluAsnGlnSerSerGlnArgTyrAla
 589201 : CCCCCAGTGCCCTGTGGTGGTGGACACGATGGAGAACCAAAGCAGCCAGCGCTATGCG : 589257

    211 : AlaLeuProGluArgLeuTyrIleIleGlnGluGlyArgIleLeuTyrLys  >>>>  :    228
          |||||||||||||||||||||:!::!!||||||||||||||||||||||||       
          AlaLeuProGluArgLeuTyrValLeuGlnGluGlyArgIleLeuTyrLys++     
 589258 : GCACTGCCTGAGAGGCTCTATGTGCTCCAGGAGGGCAGGATCCTCTACAAGgt..... : 589313

    229 : Target Intron 3 >>>>  GlyLysSerGlyProTrpAsnTyrAsnProGluGlu :    239
              2271 bp           ||||||||||||||||||||||||:!!|||||||||
                              ++GlyLysSerGlyProTrpAsnTyrHisProGluGlu
 589314 : ....................agGGTAAATCTGGCCCTTGGAACTACCATCCAGAGGAA : 591615

    240 : ValArgAlaValLeuGluLysLeuHis :    248
          |||||||||||||||||||||||||||
          ValArgAlaValLeuGluLysLeuHis
 591616 : GTTCGTGCTGTTCTGGAAAAGCTCCAC : 591644

vulgar: SPP00000002_2.0 0 248 . gi|472269059|gb|KB715598.1| 576640 591644 + 1072 M 47 141 G 5 0 M 60 180 S 0 1 5 0 2 I 0 7033 3 0 2 S 1 2 M 47 141 S 0 1 5 0 2 I 0 4963 3 0 2 S 1 2 M 66 198 5 0 2 I 0 2267 3 0 2 M 21 63
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	gene	576641	591644	1072	+	.	gene_id 1 ; sequence SPP00000002_2.0 ; gene_orientation +
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	cds	576641	576962	.	+	.	
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	exon	576641	576962	.	+	.	insertions 0 ; deletions 5
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice5	576963	576964	.	+	.	intron_id 1 ; splice_site "GT"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	intron	576963	583999	.	+	.	intron_id 1
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice3	583998	583999	.	+	.	intron_id 0 ; splice_site "AG"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	cds	584000	584143	.	+	.	
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	exon	584000	584143	.	+	.	insertions 0 ; deletions 0
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice5	584144	584145	.	+	.	intron_id 2 ; splice_site "GT"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	intron	584144	589110	.	+	.	intron_id 2
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice3	589109	589110	.	+	.	intron_id 1 ; splice_site "AG"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	cds	589111	589310	.	+	.	
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	exon	589111	589310	.	+	.	insertions 0 ; deletions 0
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice5	589311	589312	.	+	.	intron_id 3 ; splice_site "GT"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	intron	589311	591581	.	+	.	intron_id 3
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	splice3	591580	591581	.	+	.	intron_id 2 ; splice_site "AG"
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	cds	591582	591644	.	+	.	
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	exon	591582	591644	.	+	.	insertions 0 ; deletions 0
gi|472269059|gb|KB715598.1|	exonerate:protein2genome:local	similarity	576641	591644	1072	+	.	alignment_id 1 ; Query SPP00000002_2.0 ; Align 576641 1 141 ; Align 576782 53 180 ; Align 584002 114 141 ; Align 589113 162 198 ; Align 591582 228 63
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis