TBLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPP00000002_2.0 # Protein # Iodothyronine deiodinase 1 (DI1) #
Human (Homo sapiens)
(249 letters)
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/geno
me.fa
16,710 sequences; 3,156,886,159 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11... 158 2e-37
gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11... 153 1e-35
gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11... 139 1e-31
gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11... 115 2e-24
gi|472267672|gb|KB716985.1| Leptonychotes weddellii isolate WS11... 36 1.8
>gi|472269059|gb|KB715598.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00892, whole genome
shotgun sequence
Length = 851605
Score = 158 bits (400), Expect = 2e-37
Identities = 75/113 (66%), Positives = 83/113 (73%)
Frame = +2
Query: 1 MGLPQPGLWLKRXXXXXXXXXXXXXXXXXXXXFPDRVKRNILAMGEKTGMTRNPHFSHDN 60
MGLP+PGLWLKR FP+RVK++ILAM EK NPHFS+DN
Sbjct: 576641 MGLPRPGLWLKRLWVLLQVAVQVAVGKVFLILFPERVKQHILAMNEK-----NPHFSYDN 576805
Query: 61 WIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSGQRCNIWEFMQG 113
W PTF+S QYFWFVLKVRWQRLED TE GGLAPNCPVVRLSGQRC+IW+FMQG
Sbjct: 576806 WAPTFYSMQYFWFVLKVRWQRLEDRTEPGGLAPNCPVVRLSGQRCHIWDFMQG 576964
Score = 122 bits (307), Expect = 1e-26
Identities = 58/72 (80%), Positives = 65/72 (90%)
Frame = +3
Query: 160 SDGWAFKNNMDIRNHQNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYII 219
+DGWAFKNN++IR H+NLQDRLQAA LLL RSPQCPVVVDTM+NQSSQ YAALPERLY++
Sbjct: 589107 ADGWAFKNNVNIRTHRNLQDRLQAARLLLDRSPQCPVVVDTMENQSSQRYAALPERLYVL 589286
Query: 220 QEGRILYKGKSG 231
QEGRILYK G
Sbjct: 589287 QEGRILYKVTRG 589322
Score = 90.1 bits (222), Expect = 1e-16
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +1
Query: 111 MQGNRPLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHAS 160
+ GNRPLVLNFGSCT PSF+FKFDQFKRL EDF S ADFL+IYIEEAHAS
Sbjct: 583993 VSGNRPLVLNFGSCT*PSFLFKFDQFKRLTEDFCSTADFLIIYIEEAHAS 584142
Score = 49.7 bits (117), Expect = 2e-04
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 225 LYKGKSGPWNYNPEEVRAVLEKLH 248
L +GKSGPWNY+PEEVRAVLEKLH
Sbjct: 591573 LLQGKSGPWNYHPEEVRAVLEKLH 591644
>gi|472268823|gb|KB715834.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold01128, whole genome
shotgun sequence
Length = 719466
Score = 153 bits (386), Expect = 1e-35
Identities = 86/192 (44%), Positives = 115/192 (59%), Gaps = 2/192 (1%)
Frame = -3
Query: 57 SHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGLAPNCPVVRLSG-QRCNIWEFMQGNR 115
S DN + T S + W K+ + + GG APN VV +G Q +I ++ +GNR
Sbjct: 718993 SDDNRLCTLASLKAVWHGQKLDFFK---QAHEGGPAPNSEVVLPNGFQNQHILDYARGNR 718823
Query: 116 PLVLNFGSCTXPSFMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKNN-MDIRNH 174
PLVLNFGSCT P FM + F RL+ + DFL+IYIEEAH SDGW ++ I H
Sbjct: 718822 PLVLNFGSCT*PPFMARMSAFHRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQH 718643
Query: 175 QNLQDRLQAAHLLLARSPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWN 234
++L+DR+ AA +L +P C +V+DTM N SS Y A ERLY+IQ G I+Y+G GP
Sbjct: 718642 RSLEDRVSAAQVLQQGAPSCSLVLDTMANSSSSAYGAYFERLYVIQNGTIMYQGGRGPDG 718463
Query: 235 YNPEEVRAVLEK 246
Y E+R LE+
Sbjct: 718462 YQVSELRTWLER 718427
>gi|472269539|gb|KB715150.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00444, whole genome
shotgun sequence
Length = 1362633
Score = 139 bits (350), Expect = 1e-31
Identities = 78/185 (42%), Positives = 105/185 (56%), Gaps = 25/185 (13%)
Frame = +2
Query: 87 ELGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTXPS 128
+LG APN VV +S G C++ +F RPLV+NFGS T P
Sbjct: 1059191 KLGEDAPNSSVVHVSNSEGGDNSRNGAQVKMVDGAECHLLDFASPERPLVVNFGSAT*PP 1059370
Query: 129 FMFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN----NMDIRNHQNLQDRLQAA 184
F + F +L+E+FSS+ADFL++YI+EAH SDGWA + +++ H+N +DR AA
Sbjct: 1059371 FTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCAAA 1059550
Query: 185 HLLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVR 241
H LL R PQC VV D M N ++ Y ER+ I+Q +I Y G GP+ YN +EVR
Sbjct: 1059551 HQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFCYNLQEVR 1059730
Query: 242 AVLEK 246
LEK
Sbjct: 1059731 RWLEK 1059745
>gi|472269548|gb|KB715141.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold00435, whole genome
shotgun sequence
Length = 1363233
Score = 115 bits (289), Expect = 2e-24
Identities = 70/184 (38%), Positives = 97/184 (52%), Gaps = 25/184 (13%)
Frame = +1
Query: 88 LGGLAPNCPVVRLS------------------GQRCNIWEFMQGNRPLVLNFGSCTXPSF 129
LG APN VV +S G + ++ +F RPLV+NFGS + P F
Sbjct: 833872 LGEDAPNSSVVHVSYSEGGDNSRNGAQVKMVDGAKYHLLDFASPQRPLVVNFGSAS*PPF 834051
Query: 130 MFKFDQFKRLIEDFSSIADFLVIYIEEAHASDGWAFKN----NMDIRNHQNLQDRLQAAH 185
+ +L+E+F S+ADFL++YI EAH SD WA + +++ HQN +D AH
Sbjct: 834052 TSQLSYLSKLVEEFPSVADFLLVYINEAHPSDSWAVPGDSSLSFEVKKHQNQEDCCATAH 834231
Query: 186 LLLAR---SPQCPVVVDTMQNQSSQLYAALPERLYIIQEGRILYKGKSGPWNYNPEEVRA 242
LL + PQC VV D M N ++ Y ER+ I+Q +I Y G GP+ YN +EV
Sbjct: 834232 QLLEQFSLPPQC*VVTDHMGNNANVAYGVGFERVCIVQRQKIAYLGGKGPFYYNLQEVWH 834411
Query: 243 VLEK 246
LEK
Sbjct: 834412 WLEK 834423
>gi|472267672|gb|KB716985.1| Leptonychotes weddellii isolate WS11-02
unplaced genomic scaffold scaffold02279, whole genome
shotgun sequence
Length = 458611
Score = 36.2 bits (82), Expect = 1.8
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 42 LAMGEKTGMTRNPHFSHDNWIPTFFSTQYFWFVLKVRWQRLEDTTELGGL 91
L GEKTG + F +NW FF + W L++ W+ L++ T L L
Sbjct: 198293 LPRGEKTGNIASFGFLDENWAAAFFQNSHIWGFLEI-WKELKNKTILSPL 198439
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 3,087,506,849
Number of sequences in database: 5788
Database: /cursos/BI/genomes/project_2014/Leptonychotes_weddellii/ge
nome.fa.01
Posted date: Oct 18, 2013 6:11 PM
Number of letters in database: 69,379,310
Number of sequences in database: 10,922
Lambda K H
0.324 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,026,187,806
Number of Sequences: 16710
Number of extensions: 15095434
Number of successful extensions: 83536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 448
Number of HSP's that attempted gapping in prelim test: 76479
Number of HSP's gapped (non-prelim): 20197
length of query: 249
length of database: 1,052,295,386
effective HSP length: 129
effective length of query: 120
effective length of database: 1,050,139,796
effective search space: 126016775520
effective search space used: 126016775520
frameshift window, decay const: 40, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 76 (33.9 bits)