genewise output
Score 262.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000024_1.0    2 ERQEESLSARPALETEGLRFLHTT                          
                     ER  E L ARPALETEGLRFLH T                          
                     ERDGERLLARPALETEGLRFLHVT          V:V[gtg]        
gi|408541484|gb84953 gcgggcccgccgcgaggcctccgaGGTGAGTG  Intron 1        
                     agagagttcgcctacagtgttatc <1-----[85026:85476]     
                     agtgaggccaggggcaggccgccc                          


SPP00000024_1.0   26      GSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAV 
                          G+LLA+YGWYIV S I+L V  QKLS RLR LRQRQ   +AA V 
                          GALLASYGWYIVVSVIVLVVAVQKLSTRLRVLRQRQRSISAAPV 
gi|408541484|gb85474 CAGTGggccgatgttaggagagcggggcactacccgtccaccaaaggcg 
                     -1>  gcttcgaggatttgttttttctaatccgtgttgagaggtgccct 
                          ccggcttcgccccccccccggggacctggacggggggtctgccg 


SPP00000024_1.0   71                           PDVVVKRQEALAAARLKMQEELN 
                                               PD VVK+QEALAAAR+KMQEELN 
                               E:E[gaa]        PDTVVKQQEALAAARMKMQEELN 
gi|408541484|gb85611 GGTCAGTG  Intron 2   TAGAAcgaggaccggtgggcaaacggta 
                      <1-----[85612:88865]-1>  cacttaaaactcccgtataaata 
                                               tttttgaaataatttgagaaaat 


SPP00000024_1.0   95 AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
                      Q EKHKEKL+Q                       LEEEKRRQKIEMWD 
                     VQAEKHKEKLRQ                       LEEEKRRQKIEMWD 
gi|408541484|gb88937 gcggacagacacGTATGGG  Intron 3   TAGcgggaaacaagatg 
                     tacaaaaaatga<0-----[88973:99966]-0>taaaaggaatatga 
                     gatagtgagaag                       taaagaaggtaggc 


SPP00000024_1.0  121 SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
                     SMQEGKSYKGN KKPQ                       EE++ GPSTS 
                     SMQEGKSYKGNTKKPQ                       EENNSGPSTS 
gi|408541484|g100009 aacggaatagaaaaccGTGCCTG  Intron 4   CAGggaatgctat 
                     gtaagagaagacaaca<0-----[100057:10014-0>aaaacgcccc 
                     cgaaaaccaatcagtg                       agtctgttaa 


SPP00000024_1.0  147 SV-LKRKSDRKPLRGG                          YNPLSGE 
                     S+  K K DRKPLRGG                          YNPLSGE 
                     SLPPKHKPDRKPLRGG          G:G[ggt]        YNPLSGE 
gi|408541484|g100180 tcccacacgaactcggGGTAAGTG  Intron 5   CAGGTtacctgg 
                     ctccaaacagactggg <1-----[100229:10298-1>  aactcga 
                     atcgatatcagagtat                          cctgtga 


SPP00000024_1.0  170 GGGACSWRPGRRGPSSGG                                
                     G G CSWRPGRRGPS+GG                                
                     GSGTCSWRPGRRGPSTGG                                
gi|408541484|g103006 gagatttacgcagctagg                                
                     gggcgcggcggggcccgg                                
                     accgccggtacacaatta                                


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|408541484|gb|JH947448.1|:subseq(2058201,200269).pep
ERDGERLLARPALETEGLRFLHVTVGALLASYGWYIVVSVIVLVVAVQKLSTRLRVLRQR
QRSISAAPVEPDTVVKQQEALAAARMKMQEELNVQAEKHKEKLRQLEEEKRRQKIEMWDS
MQEGKSYKGNTKKPQEENNSGPSTSSLPPKHKPDRKPLRGGGYNPLSGEGSGTCSWRPGR
RGPSTGG
//
>gi|408541484|gb|JH947448.1|:subseq(2058201,200269).[84953:103059].sp
GAACGGGATGGGGAACGGCTGCTCGCCCGACCGGCGCTGGAGACCGAAGGGCTGCGCTTC
CTGCACGTCACCGTGGGCGCCCTGCTGGCCAGTTATGGCTGGTACATCGTCGTCAGCGTC
ATCGTCCTCGTCGTGGCGGTGCAGAAACTCTCCACTCGGCTGCGAGTCTTGCGGCAGAGG
CAGCGGAGTATCAGTGCGGCCCCCGTGGAACCTGATACTGTTGTTAAGCAACAAGAAGCT
TTAGCAGCTGCTCGTATGAAAATGCAAGAAGAATTAAATGTGCAAGCTGAAAAGCATAAG
GAAAAGCTAAGACAGCTTGAAGAAGAAAAGAGAAGACAGAAGATTGAAATGTGGGACAGC
ATGCAAGAAGGAAAAAGCTACAAAGGAAATACCAAAAAGCCTCAGGAAGAGAATAACTCT
GGGCCTTCTACATCATCACTTCCCCCGAAACATAAACCTGACAGAAAGCCATTGCGTGGA
GGTGGTTACAACCCTCTGTCTGGGGAAGGAAGCGGCACGTGCTCCTGGAGGCCTGGACGC
AGAGGCCCATCAACTGGTGGA
//
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	match	84953	103059	262.92	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	84953	85025	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	intron	85026	85476	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	85477	85611	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	intron	85612	88865	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	88866	88972	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	intron	88973	99966	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	99967	100056	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	intron	100057	100149	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	100150	100228	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	intron	100229	102982	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2058201,200269)	GeneWise	cds	102983	103059	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2058201,200269)-genewise-prediction-1
//