genewise output
Score 283.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000091_2.0   40 GSLATCELPLAKSEWQKKLTPEQFYVTREKGTEP                
                     GS + CEL LAKS+WQKKL+P+QFY+TREKGTEP                
                     GSPSNCELSLAKSDWQKKLSPDQFYITREKGTEP                
gi|408541749|gb99997 gtctatgctcgaagtcaacacgcttaaagagagc                
                     gcccagatctcagagaaatgcaatatcgaagcac                
                     atgattggttcgtcgagagcccacccaaaaatgg                


SPP00000091_2.0   74                        PFSGIYLNNKEAGMYHCVCCDSPLF  
                                            PFSG YLNNKE+GMYHCVCCDSPLF  
                                            PFSGTYLNNKESGMYHCVCCDSPLF  
gi|408541749|g100099 GTAAGCT  Intron 1   CAGctagatcaaagtgatctgttgacct  
                     <0-----[100099:41787-0>ctggcataaaacgtaagtggagctt  
                                            tctaccgtcggaagtctacttcacc  


SPP00000091_2.0   99                           SEKKYCSGTGWPSFSEAHGTSGS 
                                               SEKKYCSGTGWPSFSEAHGTSGS 
                                S:S[agt]       SEKKYCSGTGWPSFSEAHGTSGS 
gi|408541749|g417954 AGGTAAGAT  Intron 2   CAGTtgaatttgagtctttggcgatgt 
                       <2-----[417956:42716-2> caaaagcgcggcctcacagccgc 
                                               taggcctctggcatcgtctatct 


SPP00000091_2.0  123 DESHTGILRRLDTSLGSARTEVVCKQ                        
                     DES+TGILRRLDTSLG ARTEVVCKQ                        
                     DESNTGILRRLDTSLGLARTEVVCKQ                        
gi|408541749|g427232 ggaaagacaccgattgtgcagggtacGTAGGTC  Intron 3   CAG 
                     aagacgttggtacctgtcgcattgaa<0-----[427310:42861-0> 
                     tatcagcgatgccaaagtcagtccgg                        


SPP00000091_2.0  149 CEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH                
                     CEAHLGHVFPDGPGP GQRFCINSVALKFKP KH                
                     CEAHLGHVFPDGPGPTGQRFCINSVALKFKPSKH                
gi|408541749|g428619 tggccgcgtcggcgcagcattaaaggcatacaac                
                     gacatgattcagcgccgagtgtagtctatacgaa                
                     tatttttgtttatgcttggttcctgcggtaatac                


//
Making a S in phase 2 intron
>gi|408541749|gb|JH947183.1|:subseq(6218979,528720).pep
GSPSNCELSLAKSDWQKKLSPDQFYITREKGTEPPFSGTYLNNKESGMYHCVCCDSPLFS
SEKKYCSGTGWPSFSEAHGTSGSDESNTGILRRLDTSLGLARTEVVCKQCEAHLGHVFPD
GPGPTGQRFCINSVALKFKPSKH
//
>gi|408541749|gb|JH947183.1|:subseq(6218979,528720).[99997:428720].sp
GGATCTCCGTCAAATTGTGAGCTGTCTCTTGCCAAGAGTGACTGGCAAAAGAAACTGAGC
CCCGACCAATTCTACATCACAAGAGAAAAAGGAACTGAGCCGCCTTTCAGTGGAACCTAC
CTGAATAACAAGGAGTCAGGAATGTATCACTGTGTATGCTGTGATAGCCCACTCTTCAGT
TCTGAAAAGAAGTACTGCTCTGGCACTGGGTGGCCCTCATTTTCCGAGGCTCACGGTACA
TCTGGCTCTGATGAAAGTAACACAGGGATCCTGAGACGTCTGGACACCTCATTAGGATTG
GCTCGCACAGAGGTTGTCTGCAAGCAGTGTGAAGCTCATCTTGGTCATGTGTTTCCTGAT
GGACCTGGGCCCACTGGTCAGAGGTTTTGTATCAACAGTGTGGCCCTGAAGTTTAAACCA
AGTAAACAC
//
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	match	99997	428720	283.69	+	.	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	cds	99997	100098	0.00	+	0	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	intron	100099	417878	0.00	+	.	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	cds	417879	417955	0.00	+	0	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	intron	417956	427161	0.00	+	.	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	cds	427162	427309	0.00	+	1	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	intron	427310	428618	0.00	+	.	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
gi|408541749|gb|JH947183.1|:subseq(6218979,528720)	GeneWise	cds	428619	428720	0.00	+	0	gi|408541749|gb|JH947183.1|:subseq(6218979,528720)-genewise-prediction-1
//