TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00001580_2.0 # Protein # Selenoprotein O (SelO) # Mouse (Mus musculus) (667 letters) Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome .fa 8768 sequences; 3,843,982,861 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|408541739|gb|JH947193.1| Elephantulus edwardii unplaced genom... 129 5e-60 gi|408541749|gb|JH947183.1| Elephantulus edwardii unplaced genom... 53 6e-10 >gi|408541739|gb|JH947193.1| Elephantulus edwardii unplaced genomic scaffold scaffold00064, whole genome shotgun sequence Length = 16039902 Score = 129 bits (325), Expect = 6e-28 Identities = 64/70 (91%), Positives = 66/70 (94%) Frame = -1 Query: 185 SRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGACVTSESTVMRDVFYDGNPKYEKCTV 244 SRQADGRKVLRSSIREFLCSEAM HLGIP+TRAGACVTS TV+RDVFYDGNPK EKCTV Sbjct: 894633 SRQADGRKVLRSSIREFLCSEAMSHLGIPSTRAGACVTSACTVVRDVFYDGNPKPEKCTV 894454 Query: 245 VLRIAPTFIR 254 VLRIAPTFIR Sbjct: 894453 VLRIAPTFIR 894424 Score = 120 bits (300), Expect = 5e-25 Identities = 53/55 (96%), Positives = 53/55 (96%) Frame = -3 Query: 132 PGTEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSR 186 PG EPAAHCYCGHQFGQFAGQLGDGAAMYLGEVC AAGERWELQLKGAGPTPFSR Sbjct: 897205 PGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCPAAGERWELQLKGAGPTPFSR 897041 Score = 119 bits (297), Expect(3) = 5e-60 Identities = 57/96 (59%), Positives = 68/96 (70%) Frame = -3 Query: 360 RYDPDHICNASDNAGRYTYSKQPQVCKWNLQXXXXXXXXXXXXXXXXXXXXXXFDTEFQR 419 RYDPDH+CNASD+ GRY+YSKQP+VCKWNLQ FD EFQR Sbjct: 893278 RYDPDHVCNASDSGGRYSYSKQPEVCKWNLQKLAEALAPELPLEVGMAVVAEEFDAEFQR 893099 Query: 420 HYLQKMRKKLGLIRVEKEEDGTLVAKLLETMHLTGA 455 HYLQKMR+KLGL +VE ++D LVA+LL+TMH+TGA Sbjct: 893098 HYLQKMRRKLGL-QVELDDDPALVAQLLDTMHVTGA 892994 Score = 96.3 bits (238), Expect = 8e-18 Identities = 49/64 (76%), Positives = 53/64 (82%) Frame = -1 Query: 254 RFGSFEIFKPPDEHTGRAGPSVGRDDIRVQLLDYVISSFYPEIQAAHTCDTDNIQRNAAF 313 RFGSFEIFKP D TGR GPSVGR+DIRVQ+LDYVI SFYPEIQAA+ D +RNAAF Sbjct: 893985 RFGSFEIFKPADSVTGREGPSVGRNDIRVQMLDYVIDSFYPEIQAAYAKDPQ--RRNAAF 893812 Query: 314 FREV 317 FREV Sbjct: 893811 FREV 893800 Score = 96.3 bits (238), Expect(3) = 5e-60 Identities = 42/46 (91%), Positives = 46/46 (100%) Frame = -2 Query: 316 EVTQRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRY 361 +VT+RTARMVAEWQCVGFCHGVLNTDNMSI+GLTIDYGPFGFLDR+ Sbjct: 893534 QVTKRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRW 893397 Score = 89.0 bits (219), Expect = 1e-15 Identities = 45/79 (56%), Positives = 56/79 (70%) Frame = -1 Query: 501 PRQLSMMLMLAQSNPQLFALIGTQANVTKELERVEHQSRLEQLSPSDLQRKNRDHWEAWL 560 PRQLS+MLMLAQSNPQL AL+G+QA + +ELER E +RLEQLS ++LQ +NR W WL Sbjct: 892425 PRQLSVMLMLAQSNPQLLALVGSQAGLARELERREQHARLEQLSAAELQARNRASWTEWL 892246 Query: 561 QEYRDRLDKEKEGVGDTAA 579 Q YR E G G + + Sbjct: 892245 QGYR*GRRAEGAGGGQSGS 892189 Score = 84.0 bits (206), Expect(2) = 8e-25 Identities = 40/55 (72%), Positives = 45/55 (81%) Frame = -2 Query: 566 RLDKEKEGVGDTAAWQAERVRVMRANNPKYVLRNYIAQKAIEAAENGDFSEVRRV 620 RL+K+ EG GD AWQAERV +M ANNPKYVLRNYIAQ AI+AAE+GDFSE V Sbjct: 892163 RLEKDMEGAGDPEAWQAERVHLMLANNPKYVLRNYIAQNAIQAAESGDFSEASGV 891999 Score = 63.9 bits (154), Expect(3) = 5e-60 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 2/52 (3%) Frame = -1 Query: 453 TGADFTNTFCVLSSFPADLS--DSAEFLSRLTSQCASLEELRLAFRPQMDPR 502 TGADFTNTF +LSSF A S + A FL ++ QCASLEEL+ A RPQMDPR Sbjct: 892899 TGADFTNTFYLLSSFRAGPSSPEHAAFLDQVLQQCASLEELKRALRPQMDPR 892744 Score = 56.2 bits (134), Expect(2) = 8e-25 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 2/54 (3%) Frame = -3 Query: 616 EVRRVLKLLESPYHSEEEATGPEAVA--RSTEEQSSYSNRPPLWAAELCVTXSS 667 +VRRVLKLLE+PY EE+ P+ V + T SSYS+RPP WA+ELCVT SS Sbjct: 891931 QVRRVLKLLEAPYCMEED---PQVVEEPQGTTVGSSYSSRPPPWASELCVT*SS 891779 Score = 51.6 bits (122), Expect = 2e-04 Identities = 30/58 (51%), Positives = 35/58 (60%) Frame = -3 Query: 1 MASVRAAVGASLAVARTRPRCVGXXXXXXXXXXXXXXXMEPTPRWLAGLRFDNRALRE 58 MA++RAA+G+SLA RT +G ME PRWLAGLRFDNRALRE Sbjct: 897649 MAALRAALGSSLAATRTVSLPLGRRRRAPCSASASA--MESAPRWLAGLRFDNRALRE 897482 >gi|408541749|gb|JH947183.1| Elephantulus edwardii unplaced genomic scaffold scaffold00054, whole genome shotgun sequence Length = 18472891 Score = 53.1 bits (126), Expect(2) = 6e-10 Identities = 24/32 (75%), Positives = 28/32 (87%) Frame = -1 Query: 186 RQADGRKVLRSSIREFLCSEAMFHLGIPTTRA 217 R DGR VLRSS+RE+LCSEAM +LGIPT+RA Sbjct: 11950549 RNGDGRAVLRSSVREYLCSEAMHYLGIPTSRA 11950454 Score = 36.6 bits (83), Expect(2) = 6e-10 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -2 Query: 169 GERWELQLKGAGPTPFSR 186 GE+WELQLKG+G TP+SR Sbjct: 11950698 GEKWELQLKGSGKTPYSR 11950645 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 3,699,102,358 Number of sequences in database: 427 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa.01 Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 144,880,503 Number of sequences in database: 8341 Lambda K H 0.320 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,742,490,897 Number of Sequences: 8768 Number of extensions: 39686460 Number of successful extensions: 153366 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 162 Number of HSP's successfully gapped in prelim test: 166 Number of HSP's that attempted gapping in prelim test: 132229 Number of HSP's gapped (non-prelim): 64013 length of query: 667 length of database: 1,281,327,620 effective HSP length: 141 effective length of query: 526 effective length of database: 1,280,091,332 effective search space: 673328040632 effective search space used: 673328040632 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 82 (36.2 bits)