TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00001562_2.0 # Protein # Selenocysteine synthase (SecS) #
Mouse (Mus musculus)
         (496 letters)

Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome
.fa 
           8768 sequences; 3,843,982,861 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|408541552|gb|JH947380.1| Elephantulus edwardii unplaced genom...   133   4e-29
gi|408541777|gb|JH947155.1| Elephantulus edwardii unplaced genom...   133   4e-29
gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genom...    36   6.5  

>gi|408541552|gb|JH947380.1| Elephantulus edwardii unplaced genomic
              scaffold scaffold00251, whole genome shotgun sequence
          Length = 4145887

 Score =  133 bits (334), Expect = 4e-29
 Identities = 68/93 (73%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
 Frame = +3

Query: 404    RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 463
              R VPLG+VQTVSGHTFRGFMSH+D YPCAYLNAAAAIGMK QDVDLFIKRL KCL IVRK
Sbjct: 407244 RVVPLGSVQTVSGHTFRGFMSHSDRYPCAYLNAAAAIGMKTQDVDLFIKRLGKCLKIVRK 407423

Query: 464    EQTRASVVSGADRN-KAEDADIEEMALKLDDVL 495
              EQ+  S  S  D++   ED  + EMAL+LD+VL
Sbjct: 407424 EQSPGSDASQVDQDTTTEDGAVGEMALRLDNVL 407522



 Score =  114 bits (286), Expect = 1e-23
 Identities = 52/58 (89%), Positives = 54/58 (93%)
 Frame = +3

Query: 35     LLEQGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFI 92
              L  +GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV S LVARRHYRF+
Sbjct: 362670 LFPKGKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVVSTLVARRHYRFV 362843



 Score =  109 bits (272), Expect = 6e-22
 Identities = 49/54 (90%), Positives = 54/54 (100%)
 Frame = +1

Query: 130    GVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAG 183
              GV++VA+CFVVPMATGMSLTLCFLTLRHKRPKAKYI+WPRIDQKSCFKSM+TAG
Sbjct: 366178 GVNTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYILWPRIDQKSCFKSMITAG 366339



 Score = 97.8 bits (242), Expect = 2e-18
 Identities = 45/52 (86%), Positives = 50/52 (96%)
 Frame = +3

Query: 183    GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR 234
              GFEPVVIENVLEGDELRTDL+AVEAK+QELG + ILC+HSTT+CFAPRVPDR
Sbjct: 371688 GFEPVVIENVLEGDELRTDLQAVEAKVQELGADQILCVHSTTSCFAPRVPDR 371843



 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 42/45 (93%), Positives = 44/45 (97%)
 Frame = +3

Query: 269    GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR 313
              GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE FIQ+ISKMYPG+
Sbjct: 384384 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNESFIQEISKMYPGK 384518



 Score = 80.5 bits (197), Expect = 3e-13
 Identities = 40/53 (75%), Positives = 48/53 (90%)
 Frame = +3

Query: 83     LVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLAGVHSVA 135
              L+A    RFIHGIGRSGDI+AVQPKAAGSSLLNKITNSLVL++IKLAG++ ++
Sbjct: 365751 LLAHFLLRFIHGIGRSGDIAAVQPKAAGSSLLNKITNSLVLDIIKLAGMYRIS 365909



 Score = 72.8 bits (177), Expect = 6e-11
 Identities = 36/53 (67%), Positives = 40/53 (75%)
 Frame = +2

Query: 234    RLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNF 286
              RLEELAVICANY IPH+VNNAYG+QSSKCMHLIQQ     R    V +  +NF
Sbjct: 377366 RLEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQVRGFRRNQRCVLTYCRNF 377524



 Score = 68.9 bits (167), Expect = 9e-10
 Identities = 33/38 (86%), Positives = 35/38 (92%)
 Frame = +1

Query: 1      MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQ 38
              MN ESFAAGER VSPAYVRQGCEARR+HEHLIR LLE+
Sbjct: 361516 MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRQLLEK 361629



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 29/45 (64%), Positives = 37/45 (82%)
 Frame = +2

Query: 303    IQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVY 347
              ++++  +  GRASASPSLDVLITLLSLG +GY+KLLKERK  F +
Sbjct: 384617 VRNLFILISGRASASPSLDVLITLLSLGSNGYKKLLKERKVSFPF 384751



 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = +1

Query: 342    KEMFVYLSTQLKKLAEAHNERLLQTPHNPISL 373
              +EMF YLS++LKKL+EA+NERLL TPHNPISL
Sbjct: 401953 QEMFSYLSSELKKLSEAYNERLLHTPHNPISL 402048



 Score = 53.5 bits (127), Expect = 4e-05
 Identities = 28/35 (80%), Positives = 30/35 (85%)
 Frame = +3

Query: 374    AMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPL 408
              AMTL+T+D H  KAVTQLGSMLFTRQVSGAR V L
Sbjct: 404460 AMTLETLDEHSYKAVTQLGSMLFTRQVSGARYVCL 404564


>gi|408541777|gb|JH947155.1| Elephantulus edwardii unplaced genomic scaffold
               scaffold00026, whole genome shotgun sequence
          Length = 24599883

 Score =  133 bits (334), Expect = 4e-29
 Identities = 68/93 (73%), Positives = 76/93 (81%), Gaps = 1/93 (1%)
 Frame = -2

Query: 404     RAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 463
               R VPLG+VQTVSGHTFRGFMSH+D YPCAYLNAAAAIGMK QDVDLFIKRL KCL IVRK
Sbjct: 9299474 RVVPLGSVQTVSGHTFRGFMSHSDRYPCAYLNAAAAIGMKTQDVDLFIKRLGKCLKIVRK 9299295

Query: 464     EQTRASVVSGADRN-KAEDADIEEMALKLDDVL 495
               EQ+  S  S  D++   ED  + EMAL+LD+VL
Sbjct: 9299294 EQSPGSDASQVDQDTTTEDGAVGEMALRLDNVL 9299196


>gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genomic scaffold
                scaffold00002, whole genome shotgun sequence
          Length = 47609318

 Score = 36.2 bits (82), Expect = 6.5
 Identities = 41/142 (28%), Positives = 57/142 (40%), Gaps = 2/142 (1%)
 Frame = -3

Query: 252      NNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYP 311
                N++Y  QS K + L +Q A V +    V   D     PV   I + F       IS + P
Sbjct: 30641859 NSSYVSQSQKTLPLHKQDALVHKATLSVNKHDILIPPPVYKRISSPF-------ISLVIP 30641701

Query: 312      GRASASPSLDVLITLLSLGCSG--YRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHN 369
                  + +S SL  L    SL C    +   L  +K M         +    HN + ++T   
Sbjct: 30641700 WHSRSSSSLWCLFFFPSLLCLPLVHCVFLLAQKSMISCFLFLFTRRCIIHNSKEVETTQV 30641521

Query: 370      PISLAMTLKTIDGHHDKAVTQL 391
                PI+  M  KTI   H K  T L
Sbjct: 30641520 PITKQMDRKTIGQSHKKYYTVL 30641455


  Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno
  me.fa
    Posted date:  Oct 18, 2013  6:06 PM
  Number of letters in database: 3,699,102,358
  Number of sequences in database:  427
  
  Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno
  me.fa.01
    Posted date:  Oct 18, 2013  6:06 PM
  Number of letters in database: 144,880,503
  Number of sequences in database:  8341
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,165,189,057
Number of Sequences: 8768
Number of extensions: 32582593
Number of successful extensions: 126773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 174
Number of HSP's that attempted gapping in prelim test: 108000
Number of HSP's gapped (non-prelim): 55459
length of query: 496
length of database: 1,281,327,620
effective HSP length: 138
effective length of query: 358
effective length of database: 1,280,117,636
effective search space: 458282113688
effective search space used: 458282113688
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)