genewise output
Score 208.87 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000105_1.0   43 RTNSFYSFEVKDAKGRTVSLEKFKGK                        
                     R   FY F+V + +G+ VSLEK++G                         
                     REQDFYDFKVVNIRGKLVSLEKYRGS                        
gi|408541798|gb87199 cgcgttgtaggaacgacgtcgatcgtGTGAGTG  Intron 1   TAG 
                     gaaataatattatggattctaaaggc<0-----[87277:99996]-0> 
                     gggcctccggtccgcgggggggcccg                        


SPP00000105_1.0   69 ASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPK 
                      SLVVNVAS+C FTD+ Y+ L++L +++GP+HFNVLAFPCNQFG+ EP  
                     VSLVVNVASECGFTDQHYRELQQLQRDLGPHHFNVLAFPCNQFGQQEPD 
gi|408541798|gb99997 gtcggaggagtgtagcctcgccctccgcgccctagcgtctactgccgcg 
                     tctttatcgaggtcaaaagataatagatgcaatattctcgaatgaaaca 
                     gcgggcgctgtccgcgtcaagggaggtgtcccctgtcccccgtcaggtt 


SPP00000105_1.0  118 SSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFIV            
                     S+KE+ESFAR+ Y V+FP+F K+ + G  A PAF+++             
                     SNKEIESFARRTYSVSFPMFSKVAVTGSGAHPAFKYLT            
gi|408541798|g100144 aaagagatgccatagttcataagggagtggccgtatca            
                     gaaatagtcggcagtctcttgatctcgcgcacctaatc            
                     ccagtgcttcacctcttcgtcgcactcttcctccgtgc            


SPP00000105_1.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               +S KEP WNFWKYLV P+G+V   
                               D:E[gag]        TSGKEPTWNFWKYLVAPDGKVAG 
gi|408541798|g100258 GGTGAGTC  Intron 2   TAGAGatgagcatattatcggcggaggg 
                      <1-----[100259:10989-1>  ccgaaccgatgaattccagatcg 
                                               ttgggccgccggcggcccggaaa 


SPP00000105_1.0  180 FWRPEEPLEAIRPHVSQMIGQIILKKKEDL                    
                      W P   +E I+P +  ++ ++IL+K+EDL                    
                     AWDPTVSVEEIKPQIRALVRKLILRKREDL                    
gi|408541798|g109967 gtgcagtgggaaccaagcgaacaccacggt                    
                     cgacctctaatacatgcttgatttgagaat                    
                     tgtatgcgggcatgcagtgggcagggaata                    


//
Making a E in phase 1 intron
>gi|408541798|gb|JH947134.1|:subseq(8196610,210056).pep
REQDFYDFKVVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRELQQLQRDLGPHHFN
VLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAVTGSGAHPAFKYLTETSGKEP
TWNFWKYLVAPDGKVAGAWDPTVSVEEIKPQIRALVRKLILRKREDL
//
>gi|408541798|gb|JH947134.1|:subseq(8196610,210056).[87199:110056].sp
CGGGAGCAGGACTTCTATGACTTCAAGGTGGTTAACATCCGGGGCAAGCTGGTGTCGCTG
GAGAAGTACCGCGGCTCGGTGTCCCTGGTGGTGAACGTGGCCAGTGAGTGTGGCTTCACG
GACCAGCATTACCGAGAACTGCAGCAGTTACAGCGGGATCTGGGTCCCCACCACTTCAAT
GTGCTTGCCTTCCCCTGCAACCAGTTTGGCCAACAGGAGCCTGATAGCAACAAAGAGATT
GAGAGCTTTGCTCGCCGAACCTACAGTGTCTCTTTTCCCATGTTTAGCAAGGTCGCAGTC
ACTGGCTCTGGTGCCCACCCTGCCTTCAAGTATCTGACCGAGACTTCTGGGAAGGAGCCC
ACCTGGAACTTCTGGAAGTACCTGGTGGCCCCCGACGGGAAGGTAGCAGGAGCTTGGGAT
CCAACTGTGTCCGTGGAGGAGATCAAACCTCAGATCAGAGCGCTTGTGAGGAAGCTCATA
CTGCGGAAGCGAGAAGATTTA
//
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	match	87199	110056	208.87	+	.	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	cds	87199	87276	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	intron	87277	99996	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	cds	99997	100258	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	intron	100259	109895	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8196610,210056)	GeneWise	cds	109896	110056	0.00	+	2	gi|408541798|gb|JH947134.1|:subseq(8196610,210056)-genewise-prediction-1
//