genewise output
Score 301.09 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000103_1.0   29 KVDCNKGVTGTVYEYGANTIDGGEFVNFQQYAGKHILFVNVASFCGLTA 
                     + DC+ G++ T+YEYGA TIDG E++ F+QYAGK+ILFVNVAS+ GLT+ 
                     QTDCHGGISSTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTS 
gi|408541673|-102984 cagtcggaaaaatgtggcaaggggtactactggatactgaggattgtaa 
                     acagaggtggctaaagctctagaaatctaaacgaattttatcgaggtcg 
                     ggccttcacccacgtacccctgggccccggcccaccctccgcccacgac 


SPP00000103_1.0   78 TYP                          LNTLQEELKPFNVTVLGFPC 
                      Y                           LN LQEEL+PF + +LGFP  
                     QYV          E:E[gaa]        LNALQEELEPFGLVILGFPS 
gi|408541673|-102837 ctgGGTAAGAA  Intron 1   CAGAAcagccggcgctgcgatgtca 
                     aat <1-----[102827:10111-1>  tactaaatactgttttgtcg 
                     gct                          gtaaaagtaatcgctgcccc 


SPP00000103_1.0  102 NQFGKQEPGKNSEILLGL                          YVRPG 
                     NQFG+QEPG+NSEIL  L                          YVRPG 
                     NQFGQQEPGENSEILPTL           K:K[aag]       YVRPG 
gi|408541673|-101052 actgccgcggatgaccacAAGTGAGTG  Intron 2   CAGGtgccg 
                     aatgaaacgaacattcct  <2-----[100996:10059-2> atgcg 
                     catcaaaaagcagcgccc                          tccat 


SPP00000103_1.0  126 GGYVPNFQLFEKGDVNGDNEQKVFSFLK                      
                     GG+VPNFQLFEKGDVNG+NEQK ++FLK                      
                     GGFVPNFQLFEKGDVNGENEQKFYTFLK                      
gi|408541673|-100578 ggtgcatcctgagggaggagcattatcaGTGAGTG  Intron 3     
                     ggttcatattaagatagaaaaatactta<0-----[100494:100192 
                     actccccgctgactgtggtgggtccccg                      


SPP00000103_1.0  154    NSCPPTSELFGSPEHLFWDPMKVHDIRWNFEKFLVGPDGVPVMRWF 
                        NSCPPTSEL+GSP  LFW PMKVHDIRWNFEKFLVGPDG+PVMRW+ 
                        NSCPPTSELMGSPGRLFWQPMKVHDIRWNFEKFLVGPDGLPVMRWY 
gi|408541673|-100194 TAGattccatgcagtcgccttccaagcgactatgatcggcggccgactt 
                     -0>acgccccattgccggttgactataatggataatttgcagtcttgga 
                        cccaccagcgcttccccgatggctcccgctggcggggtcgccgagc 


SPP00000103_1.0  200 HHTPVRIVQSDIMEYLNQ                                
                     H T V  V+ DI+ Y+ +                                
                     HRTTVNTVKMDILNYMRR                                
gi|408541673|-100053 ccaagaagaagacataac                                
                     agcctactatattaatgg                                
                     cccaccgcggccgccggt                                


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|408541673|gb|JH947259.1|:subseq(2149272,202984).pep
QTDCHGGISSTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTSQYVELNALQEE
LEPFGLVILGFPSNQFGQQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGENEQKF
YTFLKNSCPPTSELMGSPGRLFWQPMKVHDIRWNFEKFLVGPDGLPVMRWYHRTTVNTVK
MDILNYMRR
//
>gi|408541673|gb|JH947259.1|:subseq(2149272,202984).[102984:99998].sp
CAGACGGACTGCCATGGTGGCATAAGCAGCACCATATACGAGTATGGAGCCCTCACCATC
GATGGGGAGGAGTACATCCCCTTCAAGCAGTACGCCGGCAAATACATCCTCTTTGTCAAC
GTGGCCAGCTACTGAGGCTTGACAAGCCAGTACGTTGAACTGAATGCACTACAAGAAGAG
CTTGAACCATTTGGCCTGGTCATTTTGGGCTTCCCCAGCAACCAATTTGGCCAACAAGAA
CCAGGAGAGAACTCAGAGATCCTGCCCACCCTCAAGTATGTCCGCCCAGGTGGAGGCTTT
GTCCCCAACTTCCAGCTCTTTGAGAAAGGCGATGTGAATGGGGAGAATGAGCAGAAGTTT
TACACCTTCCTCAAGAACTCCTGCCCACCCACCTCAGAGCTCATGGGCTCTCCTGGCCGC
CTCTTCTGGCAACCTATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTG
GGGCCGGATGGCCTGCCCGTCATGCGATGGTACCACCGCACCACAGTCAACACGGTCAAG
ATGGACATCCTGAACTACATGAGGCGT
//
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	match	102984	100000	301.09	-	.	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	cds	102984	102828	0.00	-	0	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	intron	102827	101115	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	cds	101114	100997	0.00	-	2	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	intron	100996	100595	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	cds	100594	100495	0.00	-	1	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	intron	100494	100192	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149272,202984)	GeneWise	cds	100191	100000	0.00	-	0	gi|408541673|gb|JH947259.1|:subseq(2149272,202984)-genewise-prediction-1
//