------- SECIS element -- id:1 -- grade:B ----
 Chromosome = gi|408541673|gb|JH947259.1|:subseq_2149278,202972_ Strand = + Positions = 74714 - 74785
 Found by:  Infernal (score=14.91) Covels (score=7.59)
 Stem2 length = 11   Apical loop length = 12   Insertion in stem2 = 0, 1
 Free Energy = -14.2

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         ...(((([(---....([[(((((({((((((....-........))))))}))).)))]])..--..-.)]))))...
 target  GAUGGGUGC---ACAGUGAGGAUUUCUAGCAAAACC-CUGGAUGAUUGCUGAAAGCUCUGAGAC--CC-AGAACCCUGC
                         ****            ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = gi|408541673|gb|JH947259.1|:subseq_2149278,202972_ Strand = - Positions = 85548 - 85471
 Found by:  Infernal (score=13.23) Covels (score=10.27)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -6.09

         ..(((((((.........((((((((((.(((((................))))).))))))))))..........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         .([({((((.........([[{(({((({(((...........-----....)))})))}))}]])......-.-.))))})]).
 target  GGGCAAGUUCCUCCUGUGUGACUAACAGCCUCUGAAAACCUGC-----CAAUGGGUCUGCUAUGAGUUAGUU-C-CAACUCGACA
                           ****            ^^^                         ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = gi|408541673|gb|JH947259.1|:subseq_2149278,202972_ Strand = - Positions = 98300 - 98236
 Found by:  Infernal (score=13.07)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -23.1

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((---....([[(((({((((((------......-----...))))))}))))]])..--....)))))))))
 target  CUUAGGGAA---AGUUUGAAAGGCUGGGGU------CUUGAC-----UGCACCCCACUCUUGAGAC--CGACUUCCCUGGG
                         ****                                        ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = gi|408541673|gb|JH947259.1|:subseq_2149278,202972_ Strand = + Positions = 110087 - 110156
 Found by:  Infernal (score=12.8) Covels (score=8.86)
 Stem2 length = 8   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -16.77

         ..(((((((.......((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..((((({((--(...([[{((((((((..................---))))))))}]])..--.)-))})))))..
 target  UAAGGAGGAG--GAGAUGAUGGCUCAUCUUUCUCCCAAGUAGCGCU---GAUGAGUUUGAACU--GC-UUGCUCUUGG
                         ****                                     ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = gi|408541673|gb|JH947259.1|:subseq_2149278,202972_ Strand = - Positions = 99399 - 99329
 Found by:  Infernal (score=11.11) Covels (score=14.66)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -22.8

         ..(((((((.........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(((((((........([[((({(((({(((.....---.......)))}))))})))]])----.--)))))))...
 target  UCAGGGGCGGCAUCUCCAUGAGGGUGGGGCCCGAAGCC---CCCGUGGCGGACCUCCCCCGAG----C--CUGUCCCCCG
                           ****           ^^                        ****