genewise output
Score 283.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000102_1.0   47 DCYKDVKGTIYDYEALSLNGKEHIPFKQYAGKHVLFVNVATYCGLTIQY 
                     DC+  +  TIY+Y AL+++G+E+IPFKQYAGK++LFVNVA+Y GLT QY 
                     DCHGGISSTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTSQY 
gi|408541673|-102972 gtcggaaaaatgtggcaaggggtactactggatactgaggattgtaact 
                     agaggtggctaaagctctagaaatctaaacgaattttatcgaggtcgaa 
                     ccttcacccacgtacccctgggccccggcccaccctccgcccacgacgc 


SPP00000102_1.0   96 P                          LNALQEDLKPFGLVILGFPCNQ 
                                                LNALQE+L+PFGLVILGFP NQ 
                     V          E:E[gaa]        LNALQEELEPFGLVILGFPSNQ 
gi|408541673|-102825 gGGTAAGAA  Intron 1   CAGAAcagccggcgctgcgatgtcaac 
                     t <1-----[102821:10110-1>  tactaaatactgttttgtcgaa 
                     t                          gtaaaagtaatcgctgccccca 


SPP00000102_1.0  120 FGKQEPGDNLEILPGL                          YVRPGKG 
                     FG+QEPG+N EILP L                          YVRPG G 
                     FGQQEPGENSEILPTL           K:K[aag]       YVRPGGG 
gi|408541673|-101040 tgccgcggatgaccacAAGTGAGTG  Intron 2   CAGGtgccggg 
                     tgaaacgaacattcct  <2-----[100990:10058-2> atgcggg 
                     tcaaaaagcagcgccc                          tccatac 


SPP00000102_1.0  144 FLPNFQLFAKGDVNGENEQKIFTFLK                        
                     F+PNFQLF KGDVNGENEQK++TFLK                        
                     FVPNFQLFEKGDVNGENEQKFYTFLK                        
gi|408541673|-100566 tgcatcctgagggaggagcattatcaGTGAGTG  Intron 3   TAG 
                     ttcatattaagatagaaaaatactta<0-----[100488:10018-0> 
                     tccccgctgactgtggtgggtccccg                        


SPP00000102_1.0  170 RSCPHPSETVVMSKHTFWEPIKVHDIRWNFEKFLVGPDGIPVMRWFHQA 
                      SCP  SE +      FW+P+KVHDIRWNFEKFLVGPDG+PVMRW+H+  
                     NSCPPTSELMGSPGRLFWQPMKVHDIRWNFEKFLVGPDGLPVMRWYHRT 
gi|408541673|-100185 attccatgcagtcgccttccaagcgactatgatcggcggccgacttcca 
                     acgccccattgccggttgactataatggataatttgcagtcttggaagc 
                     cccaccagcgcttccccgatggctcccgctggcggggtcgccgagcccc 


SPP00000102_1.0  219 PVSTVKSDIMAYL                                     
                      V+TVK DI+ Y+                                     
                     TVNTVKMDILNYM                                     
gi|408541673|-100038 agaagaagacata                                     
                     ctactatattaat                                     
                     accgcggccgccg                                     


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|408541673|gb|JH947259.1|:subseq(2149278,202972).pep
DCHGGISSTIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYXGLTSQYVELNALQEELE
PFGLVILGFPSNQFGQQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGENEQKFYT
FLKNSCPPTSELMGSPGRLFWQPMKVHDIRWNFEKFLVGPDGLPVMRWYHRTTVNTVKMD
ILNYM
//
>gi|408541673|gb|JH947259.1|:subseq(2149278,202972).[102972:99998].sp
GACTGCCATGGTGGCATAAGCAGCACCATATACGAGTATGGAGCCCTCACCATCGATGGG
GAGGAGTACATCCCCTTCAAGCAGTACGCCGGCAAATACATCCTCTTTGTCAACGTGGCC
AGCTACTGAGGCTTGACAAGCCAGTACGTTGAACTGAATGCACTACAAGAAGAGCTTGAA
CCATTTGGCCTGGTCATTTTGGGCTTCCCCAGCAACCAATTTGGCCAACAAGAACCAGGA
GAGAACTCAGAGATCCTGCCCACCCTCAAGTATGTCCGCCCAGGTGGAGGCTTTGTCCCC
AACTTCCAGCTCTTTGAGAAAGGCGATGTGAATGGGGAGAATGAGCAGAAGTTTTACACC
TTCCTCAAGAACTCCTGCCCACCCACCTCAGAGCTCATGGGCTCTCCTGGCCGCCTCTTC
TGGCAACCTATGAAGGTCCATGACATCCGCTGGAACTTTGAGAAGTTCCTGGTGGGGCCG
GATGGCCTGCCCGTCATGCGATGGTACCACCGCACCACAGTCAACACGGTCAAGATGGAC
ATCCTGAACTACATG
//
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	match	102972	100000	283.35	-	.	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	cds	102972	102822	0.00	-	0	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	intron	102821	101109	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	cds	101108	100991	0.00	-	2	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	intron	100990	100589	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	cds	100588	100489	0.00	-	1	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	intron	100488	100186	0.00	-	.	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
gi|408541673|gb|JH947259.1|:subseq(2149278,202972)	GeneWise	cds	100185	100000	0.00	-	0	gi|408541673|gb|JH947259.1|:subseq(2149278,202972)-genewise-prediction-1
//