genewise output
Score 856.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000145_2.0    1 MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL 
                     MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL 
                     MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL 
gi|408541642|gb99964 aggccgagagggcgcagagaagcgcgcaaagtaggtgacccacgcgaac 
                     tcgggtatatgttgataggacctcgctgccccccctaaacaggaggtct 
                     gcggggtgtgcggtcccctagggggtacctcccccctagggctgcccgc 


SPP00000145_2.0   50 DLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHAS 
                     DLGFSCF VPLP RLRS+LP   AA EA  EP EP LQVTLVDCPGHAS 
                     DLGFSCFCVPLPERLRSALP--VAASEARSEPAEPQLQVTLVDCPGHAS 
gi|408541642|g100111 gcgtttttgcccgccctgcc  gggtggatgcggccccgacggtcgcgt 
                     atgtcgtgtctcagtgcctc  tcccacgcaccacatatcttagcgacc 
                     cgcctcctgagcgtgggggc  gggcgcgcgcggtgggcggcctggccc 


SPP00000145_2.0   99 LIRTIIG                          AQIIDLMMLVIDVTKG 
                     LIRTIIG                          AQIIDLMMLVIDVTKG 
                     LIRTIIG          G:G[gga]        AQIIDLMMLVIDVTKG 
gi|408541642|g100252 caaaaagGGTGAGCG  Intron 1   TAGGAgcaagcaacgaggaag 
                     ttgcttg <1-----[100274:26851-1>  cattattttttatcag 
                     ctgccac                          cgcttagggcctgcgg 


SPP00000145_2.0  123 MQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTL 
                     MQTQSAECLVIGQIACQKL+VVLNKIDLL EGKRQAAIDKMTKKMQKTL 
                     MQTQSAECLVIGQIACQKLLVVLNKIDLLAEGKRQAAIDKMTKKMQKTL 
gi|408541642|g268569 acactggtcgagcagtcaccggcaaagctgggaacggagaaaaaacaac 
                     tacaccagtttgatcgaatttttaatattcagagacctaatcaataact 
                     ggagaaacagtcgtccgggcgcgcaaccacgcgagaattagcgagggca 


SPP00000145_2.0  172 ENT                          FRGAPIIPVAAKPGGPEAPE 
                     ENT                          FRGAPIIPVAAKPGGPEAPE 
                     ENT           K:K[aag]       FRGAPIIPVAAKPGGPEAPE 
gi|408541642|g268716 gaaAAGTAGGTT  Intron 2   TAGGtcggcaacgggacggcggcg 
                     aac  <2-----[268727:29564-2> tggccttctccacggcacca 
                     gcc                          taaggcatggggtgaagata 


SPP00000145_2.0  196 TEAPQGIPELIE                       VVKKVKSMQMFHMP 
                     TEAPQGI ELIE                       VVKKVKSMQMFHMP 
                     TEAPQGISELIE                       VVKKVKSMQMFHMP 
gi|408541642|g295708 aggccgatgcagGTATTGC  Intron 3   CAGggaagatacatcac 
                     caccagtcatta<0-----[295744:39883-0>ttaatactattatc 
                     aatagccagttg                       gagatgagggccgc 


SPP00000145_2.0  222 ITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYF 
                     ITSAMQGDRLG+CVTQFDPK LERGLVCAPESLHT+HAA++SVEKIPYF 
                     ITSAMQGDRLGLCVTQFDPKSLERGLVCAPESLHTIHAAIVSVEKIPYF 
gi|408541642|g398881 aatgacggccgttgactgcatcgcgcgtgcgtccaacggagtggaactt 
                     tccctagagtgtgtcatacactaggttgccactactaccttctaatcat 
                     caacgaacagcatgcgtctagggcgggttcgcgtcctacttcgggcgtc 


SPP00000145_2.0  271 RGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYL 
                     RG LQTKAKFHITVGHETVMGRLMFFSP P+NF  EP+LDSF+FS EYL 
                     RGALQTKAKFHITVGHETVMGRLMFFSPTPENFSHEPVLDSFDFSHEYL 
gi|408541642|g399028 cggtcaagatcaaggcgagagccattacacgatacgcgcgttgttcgtc 
                     ggctacacatatctgaacttggttttgcccaatgaacttactatcaaat 
                     ggcgacgcgcccagccgacgggcgcccgccgccccgtggcgtccgtgcc 


SPP00000145_2.0  320 FQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCP 
                     FQEQ+L KDL P  TD  EA+++AGQ TEG CP+QQWALVEFEK VTCP 
                     FQEQFLCKDLVP--TDGSEANQQAGQTTEGQCPQQQWALVEFEKAVTCP 
gi|408541642|g399175 tcgctctagcgc  aggaggaccggcaaggctcccctgcggtgaggatc 
                     taaattgaattc  caggacaaacgaccagagcaaagcttataactcgc 
                     cgggcgcgcggc  atccgccggttgcggcgccggggccggtggtccct 


SPP00000145_2.0  369 RLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKL 
                     RLCL+IGSRLDADIH NTCRLAFHG LLHGLED++YA+S LP+LKVYKL 
                     RLCLLIGSRLDADIHANTCRLAFHGTLLHGLEDKHYAESSLPKLKVYKL 
gi|408541642|g399316 cctccagtccgggacgaatccgtcgacccgcggactggatccacagtac 
                     gtgtttgcgtacatacacggtctagcttagtaaaaacagctcatataat 
                     cccggcccgctcctcacccggcccgctgcgggcgctcgctgcggggcgg 


SPP00000145_2.0  418 KHKHGLVERVASAPSP                                  
                     KHK GLVERV+  P+P                                  
                     KHKQGLVERVSPLPAP                                  
gi|408541642|g399463 acacgcggcgacccgc                                  
                     aaaagttagtgctccc                                  
                     gcaaccggggtcctct                                  


//
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|408541642|gb|JH947290.1|:subseq(6361554,499510).pep
MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFCVPL
PERLRSALPVAASEARSEPAEPQLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG
MQTQSAECLVIGQIACQKLLVVLNKIDLLAEGKRQAAIDKMTKKMQKTLENTKFRGAPII
PVAAKPGGPEAPETEAPQGISELIEVVKKVKSMQMFHMPITSAMQGDRLGLCVTQFDPKS
LERGLVCAPESLHTIHAAIVSVEKIPYFRGALQTKAKFHITVGHETVMGRLMFFSPTPEN
FSHEPVLDSFDFSHEYLFQEQFLCKDLVPTDGSEANQQAGQTTEGQCPQQQWALVEFEKA
VTCPRLCLLIGSRLDADIHANTCRLAFHGTLLHGLEDKHYAESSLPKLKVYKLKHKQGLV
ERVSPLPAP
//
>gi|408541642|gb|JH947290.1|:subseq(6361554,499510).[99964:399510].sp
ATGGCCGGGCGGCGGGTGAATGTGAATGTGGGCGTGCTGGGTCACATCGACAGCGGTAAA
ACGGCGCTGGCGCGGGCTCTAAGCACCACTGCCTCCACCGCCGCCTTCGATAAACAGCCG
CAGAGCCGTGAGCGCGGCATCACGCTCGACCTGGGCTTCTCTTGCTTCTGTGTGCCACTG
CCCGAGCGTCTGCGGTCGGCGCTGCCCGTGGCGGCGTCCGAGGCCAGGTCCGAGCCCGCG
GAGCCTCAGCTGCAGGTCACGCTGGTCGACTGTCCGGGGCACGCCTCCCTCATTAGGACC
ATCATAGGCGGAGCCCAGATCATTGATCTAATGATGCTGGTCATCGATGTGACCAAGGGG
ATGCAGACACAGTCAGCAGAATGCCTAGTGATTGGCCAGATTGCCTGCCAGAAGCTGCTC
GTGGTCCTGAACAAAATAGACCTCTTAGCCGAGGGCAAGAGACAGGCAGCAATTGATAAA
ATGACCAAGAAAATGCAGAAGACCCTAGAGAACACCAAGTTTCGAGGAGCGCCGATCATA
CCTGTGGCGGCGAAGCCTGGGGGACCAGAGGCACCTGAAACAGAAGCTCCACAGGGCATC
TCAGAGCTTATTGAGGTGGTAAAGAAAGTTAAGTCAATGCAGATGTTCCACATGCCCATC
ACATCAGCCATGCAAGGAGACCGACTGGGCTTATGTGTGACCCAGTTTGACCCTAAATCG
CTGGAGCGCGGGCTGGTGTGTGCTCCCGAGTCCCTGCATACCATCCATGCAGCCATTGTT
TCCGTGGAGAAGATCCCGTATTTCCGGGGGGCCTTGCAAACCAAGGCCAAGTTCCACATC
ACAGTGGGCCACGAGACAGTCATGGGGCGGCTCATGTTCTTCAGCCCGACCCCCGAGAAC
TTCAGCCACGAGCCTGTGCTGGACTCGTTTGACTTCTCGCATGAGTACCTCTTCCAGGAG
CAGTTCCTGTGCAAGGACCTGGTGCCCACAGATGGCAGCGAGGCCAACCAGCAGGCTGGT
CAGACCACGGAGGGCCAGTGCCCCCAGCAGCAGTGGGCCCTCGTGGAGTTTGAGAAGGCT
GTCACCTGCCCTCGCCTCTGCCTGCTGATCGGCTCCCGGCTCGATGCCGACATTCACGCA
AACACCTGCCGGCTGGCCTTCCACGGGACCCTTCTGCACGGGCTGGAGGACAAGCACTAT
GCCGAGAGCTCTCTGCCCAAGCTGAAGGTGTACAAGCTGAAGCACAAACAAGGCCTCGTG
GAGCGGGTGAGTCCCCTCCCTGCCCCT
//
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	match	99964	399510	858.29	+	.	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	cds	99964	100273	0.00	+	0	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	intron	100274	268518	0.00	+	.	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	cds	268519	268726	0.00	+	2	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	intron	268727	295646	0.00	+	.	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	cds	295647	295743	0.00	+	1	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	intron	295744	398838	0.00	+	.	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(6361554,499510)	GeneWise	cds	398839	399510	0.00	+	0	gi|408541642|gb|JH947290.1|:subseq(6361554,499510)-genewise-prediction-1
//