TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000145_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Human (Homo sapiens) (436 letters) Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome .fa 8768 sequences; 3,843,982,861 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|408541642|gb|JH947290.1| Elephantulus edwardii unplaced genom... 393 e-107 gi|408541707|gb|JH947225.1| Elephantulus edwardii unplaced genom... 49 6e-04 gi|408541800|gb|JH947132.1| Elephantulus edwardii unplaced genom... 49 0.001 gi|408541784|gb|JH947148.1| Elephantulus edwardii unplaced genom... 45 0.015 gi|408541243|gb|JH947689.1| Elephantulus edwardii unplaced genom... 43 0.058 gi|408541562|gb|JH947370.1| Elephantulus edwardii unplaced genom... 43 0.058 gi|408541285|gb|JH947647.1| Elephantulus edwardii unplaced genom... 42 0.075 gi|408541530|gb|JH947402.1| Elephantulus edwardii unplaced genom... 42 0.075 gi|408541470|gb|JH947462.1| Elephantulus edwardii unplaced genom... 42 0.13 gi|408541466|gb|JH947466.1| Elephantulus edwardii unplaced genom... 39 0.64 gi|408541763|gb|JH947169.1| Elephantulus edwardii unplaced genom... 38 1.4 gi|408541616|gb|JH947316.1| Elephantulus edwardii unplaced genom... 38 1.9 gi|408541576|gb|JH947356.1| Elephantulus edwardii unplaced genom... 37 2.4 gi|408541744|gb|JH947188.1| Elephantulus edwardii unplaced genom... 37 3.2 gi|408541792|gb|JH947140.1| Elephantulus edwardii unplaced genom... 37 3.2 gi|408541634|gb|JH947298.1| Elephantulus edwardii unplaced genom... 37 4.1 gi|408541752|gb|JH947180.1| Elephantulus edwardii unplaced genom... 37 4.1 gi|408541797|gb|JH947135.1| Elephantulus edwardii unplaced genom... 36 5.4 gi|408541637|gb|JH947295.1| Elephantulus edwardii unplaced genom... 36 7.1 gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genom... 36 7.1 >gi|408541642|gb|JH947290.1| Elephantulus edwardii unplaced genomic scaffold scaffold00161, whole genome shotgun sequence Length = 7648478 Score = 393 bits (1009), Expect = e-107 Identities = 186/228 (81%), Positives = 207/228 (90%) Frame = +1 Query: 206 IEVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVE 265 ++VVKKVKSMQMFHMPITSAMQGDRLG+CVTQFDPK LERGLVCAPESLHT+HAA++SVE Sbjct: 6760387 LQVVKKVKSMQMFHMPITSAMQGDRLGLCVTQFDPKSLERGLVCAPESLHTIHAAIVSVE 6760566 Query: 266 KIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYL 325 KIPYFRG LQTKAKFHITVGHETVMGRLMFFSP P+NF EP+LDSF+FS EYLFQEQ+L Sbjct: 6760567 KIPYFRGALQTKAKFHITVGHETVMGRLMFFSPTPENFSHEPVLDSFDFSHEYLFQEQFL 6760746 Query: 326 SKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTN 385 KDL P TD EA+++AGQ TEG CP+QQWALVEFEK VTCPRLCL+IGSRLDADIH N Sbjct: 6760747 CKDLVP--TDGSEANQQAGQTTEGQCPQQQWALVEFEKAVTCPRLCLLIGSRLDADIHAN 6760920 Query: 386 TCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERVASAPSP 433 TCRLAFHG LLHGLED++YA+S LP+LKVYKLKHK GLVERV+ P+P Sbjct: 6760921 TCRLAFHGTLLHGLEDKHYAESSLPKLKVYKLKHKQGLVERVSPLPAP 6761064 Score = 132 bits (333), Expect = 4e-29 Identities = 70/83 (84%), Positives = 76/83 (91%), Gaps = 3/83 (3%) Frame = +3 Query: 96 HASLIRTIIG---GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLP 152 ++++I T+ GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKL+VVLNKIDLL Sbjct: 6630033 YSNIILTLFSFLLGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLLVVLNKIDLLA 6630212 Query: 153 EGKRQAAIDKMTKKMQKTLENTK 175 EGKRQAAIDKMTKKMQKTLENTK Sbjct: 6630213 EGKRQAAIDKMTKKMQKTLENTK 6630281 Score = 102 bits (254), Expect = 6e-20 Identities = 57/94 (60%), Positives = 58/94 (61%) Frame = +1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGHIDSGK FDKQPQSRERGITLDLGFSCF VPLP RLRS+ Sbjct: 6461554 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFCVPLPERLRSA--LPV 6461727 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGG 106 QVTLVDCPGHASLIRTIIGG Sbjct: 6461728 AASEARSEPAEPQLQVTLVDCPGHASLIRTIIGG 6461829 >gi|408541707|gb|JH947225.1| Elephantulus edwardii unplaced genomic scaffold scaffold00096, whole genome shotgun sequence Length = 13193485 Score = 49.3 bits (116), Expect = 6e-04 Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ VDCPGH L+ T++ GA ++D +L+I + Q Q++E L +I V++L Sbjct: 4510775 VSFVDCPGHDILMATLLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLMHVLILQ 4510954 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV 184 NKIDL+ E + +++ +Q T+ GAPII + Sbjct: 4510955 NKIDLVKES*AKEQYEQILAFVQGTVA----EGAPIISI 4511059 >gi|408541800|gb|JH947132.1| Elephantulus edwardii unplaced genomic scaffold scaffold00003, whole genome shotgun sequence Length = 43889205 Score = 48.5 bits (114), Expect = 0.001 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Frame = +3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++ ++D PGH G+ + D+ +LV+D+ G++ Q+ E + + + +V LN Sbjct: 42966078 EMLIIDTPGHEYFSNLRNRGSSLCDIAILVVDIMHGLEPQTTESINLLNLKKCPFIVALN 42966257 Query: 147 KIDLLPEGKRQ------AAIDKMTKKMQK 169 KID L + K+ ++K KK+QK Sbjct: 42966258 KIDRLYDWKKSTDSDVAVTLEKQEKKLQK 42966344 Score = 40.8 bits (94), Expect = 0.22 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F VT++D PGH Sbjct: 35866785 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDAPGH 35866889 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 IR +I G D +L++ ++K QT+ L+ + ++L+V +NK Sbjct: 35866890 RDFIRNMITGTSQADCAVLIVAAGVGEFEAGISKHGQTRE-HALLAYTLGVKQLIVGVNK 35867066 Query: 148 IDLLPEGKRQAAIDKMTKKM 167 +D + Q +++ K++ Sbjct: 35867067 MDSIEPPYSQKRYEEIVKEV 35867126 >gi|408541784|gb|JH947148.1| Elephantulus edwardii unplaced genomic scaffold scaffold00019, whole genome shotgun sequence Length = 28214911 Score = 44.7 bits (104), Expect = 0.015 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = +3 Query: 92 DCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDL 150 DCPGHA ++ +I G +D +LV+ G Q+ E L++ QI + +VV +NK D Sbjct: 8109414 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHIVVYVNKADA 8109593 Query: 151 LPEGKRQA 158 + + +A Sbjct: 8109594 VQDSDGRA 8109617 >gi|408541243|gb|JH947689.1| Elephantulus edwardii unplaced genomic scaffold scaffold00560, whole genome shotgun sequence Length = 321695 Score = 42.7 bits (99), Expect = 0.058 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + + +V LNKID Sbjct: 196044 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKID 195865 Query: 150 LLPEGK 155 L + K Sbjct: 195864 RLYDWK 195847 >gi|408541562|gb|JH947370.1| Elephantulus edwardii unplaced genomic scaffold scaffold00241, whole genome shotgun sequence Length = 4294721 Score = 42.7 bits (99), Expect = 0.058 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (11%) Frame = +3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-MQT------QSAECLVIGQIACQK- 140 T++D PGH S + +IGGA DL +LVI KG +T Q+ E ++ + A K Sbjct: 3428070 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 3428249 Query: 141 LVVVLNKID 149 L+V++NK+D Sbjct: 3428250 LIVLINKMD 3428276 >gi|408541285|gb|JH947647.1| Elephantulus edwardii unplaced genomic scaffold scaffold00518, whole genome shotgun sequence Length = 541856 Score = 42.4 bits (98), Expect = 0.075 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +2 Query: 92 DCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDL 150 DCPGH ++ +I G +D +LV+ G Q+ E L++ QI + +VV +NK D Sbjct: 368408 DCPGHEDYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAIQIGVEHIVVYVNKADA 368587 Query: 151 LPEGK 155 + + + Sbjct: 368588 VQDSE 368602 >gi|408541530|gb|JH947402.1| Elephantulus edwardii unplaced genomic scaffold scaffold00273, whole genome shotgun sequence Length = 3493097 Score = 42.4 bits (98), Expect = 0.075 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-MQTQSAECLVIGQIACQKLVVVLN 146 VT++D PGH I+T+I G + D +L+I + G ++ +I + ++L+V +N Sbjct: 2737673 VTIIDAPGHKDFIKTMIAGTSLADCAVLIIAASVGDLRLNCEHAPLIYTLVVKQLIVDVN 2737494 Query: 147 KID 149 K+D Sbjct: 2737493 KMD 2737485 >gi|408541470|gb|JH947462.1| Elephantulus edwardii unplaced genomic scaffold scaffold00333, whole genome shotgun sequence Length = 2379263 Score = 41.6 bits (96), Expect = 0.13 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ +DCPGH L+ ++ GA ++D +L+I + Q Q++E L I K V++L Sbjct: 5802 VSFIDCPGHNILMTPMLNGAAVMDTALLLIAGNESCPQPQTSEHLTAI*IMKLKHVLILQ 5981 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV 184 NKIDL+ + + +++ + T+ +GA IP+ Sbjct: 5982 NKIDLVK*SQAKEQYEQILAFVHGTVA----KGASTIPI 6086 >gi|408541466|gb|JH947466.1| Elephantulus edwardii unplaced genomic scaffold scaffold00337, whole genome shotgun sequence Length = 2447256 Score = 39.3 bits (90), Expect = 0.64 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 9/140 (6%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F VT++D PGH Sbjct: 296217 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDAPGH 296321 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L++ ++K QT+ L+ + ++L+V +NK Sbjct: 296322 RDFIKNMITGTSQADCAVLIVAAGVGEFETGISKNGQTRE-HALLAYTLGVKQLIVGVNK 296498 Query: 148 IDLLPEGKRQAAIDKMTKKM 167 +D Q +++ K++ Sbjct: 296499 MDSTEPPYSQKRYEEIVKEV 296558 >gi|408541763|gb|JH947169.1| Elephantulus edwardii unplaced genomic scaffold scaffold00040, whole genome shotgun sequence Length = 21071559 Score = 38.1 bits (87), Expect = 1.4 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RE GIT+D+ F VT++D PGH Sbjct: 16741069 DKLKAEREHGITIDISLWKFETS-------------------------KYYVTIIDAPGH 16741173 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L + ++K QT L+ + ++L+V +NK Sbjct: 16741174 RDFIKNMITGTSQADCAVLSVAAGVGEFEAGISKNGQTHE-HALLAYTLGVKQLIVGVNK 16741350 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKF 176 +D Q +++ K+++ ++ T + Sbjct: 16741351 MDSTKPPYSQKRYEEIVKEVKTDIKKTGY 16741437 Score = 35.8 bits (81), Expect = 7.1 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI 117 V+ VDCPGH L+ T++ GA ++D +L+I Sbjct: 1448150 VSFVDCPGHDILMATMLNGAAVMDAALLLI 1448239 >gi|408541616|gb|JH947316.1| Elephantulus edwardii unplaced genomic scaffold scaffold00187, whole genome shotgun sequence Length = 6674987 Score = 37.7 bits (86), Expect = 1.9 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+++ F VT++D PGH Sbjct: 5526847 DKLKAERERGITIEISLWKFETS-------------------------KFYVTIIDAPGH 5526951 Query: 97 ASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ II G D +L++ + G+ C L+ + ++L+V +NK+ Sbjct: 5526952 RDFIKNIITGTSWADCAVLIVAAGVGEFEAGISKNGQTCEHALLAHTLDVKQLIVGVNKM 5527131 Query: 149 DLLPEGKRQAAIDKMTKKM 167 D Q +++ K++ Sbjct: 5527132 DSTEPPYSQKRYEEIVKEV 5527188 >gi|408541576|gb|JH947356.1| Elephantulus edwardii unplaced genomic scaffold scaffold00227, whole genome shotgun sequence Length = 4823725 Score = 37.4 bits (85), Expect = 2.4 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 8/121 (6%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+++ F VT++D PGH Sbjct: 4164240 DKLKAERERGITINISLWKFETS-------------------------KYYVTIIDAPGH 4164344 Query: 97 ASLIRTIIGGAQIIDLMML-----VIDVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ II G D +L V++ G+ C L+ + ++L+V +NK+ Sbjct: 4164345 RDFIKNIITGTTQADCAVLIVAAGVVEFEAGISKNGQTCEYALLAYTLGVKQLIVCVNKM 4164524 Query: 149 D 149 D Sbjct: 4164525 D 4164527 >gi|408541744|gb|JH947188.1| Elephantulus edwardii unplaced genomic scaffold scaffold00059, whole genome shotgun sequence Length = 18149246 Score = 37.0 bits (84), Expect = 3.2 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RE GIT+D+ F VT++D PGH Sbjct: 964220 DKLKAEREHGITIDISLWKFETS-------------------------KYYVTIIDAPGH 964116 Query: 97 ASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ +I G D +L++ + G+ C L+ ++ ++L+V +NK+ Sbjct: 964115 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTCEHALLAYTLSVKQLIVGVNKM 963936 Query: 149 DLLPEGKRQAAIDKMTKKM 167 D Q +++ K++ Sbjct: 963935 DSTKPPYSQKRYEEIVKEV 963879 >gi|408541792|gb|JH947140.1| Elephantulus edwardii unplaced genomic scaffold scaffold00011, whole genome shotgun sequence Length = 32252908 Score = 37.0 bits (84), Expect = 3.2 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = -1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIA 137 ++T +D PGHA+ GAQ+ D+++LV+ G+ Q+ E + Q A Sbjct: 13672546 KITFLDTPGHAAFSAMRARGAQVTDIVILVVAADDGVMKQTVESIQHAQDA 13672394 >gi|408541634|gb|JH947298.1| Elephantulus edwardii unplaced genomic scaffold scaffold00169, whole genome shotgun sequence Length = 7559916 Score = 36.6 bits (83), Expect = 4.1 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D PGH +I+ II G D +L++ ++K QTQ L+ + Sbjct: 4195634 VTIIDAPGHKDIIKNIIIGTSQADWAVLIVAAGVGEFKAGISKNGQTQE-HALLAYTLGV 4195810 Query: 139 QKLVVVLNKID 149 ++L+V +N++D Sbjct: 4195811 KQLIVGVNRMD 4195843 >gi|408541752|gb|JH947180.1| Elephantulus edwardii unplaced genomic scaffold scaffold00051, whole genome shotgun sequence Length = 18525102 Score = 36.6 bits (83), Expect = 4.1 Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 9/122 (7%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RE GIT+D+ F VT++D PGH Sbjct: 43629 DKLKAEREHGITIDISLWKFETS-------------------------KYYVTIIDAPGH 43733 Query: 97 ASLIRTIIGGAQIIDLMMLVID---------VTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G +D +L++ ++K QT+ L+ + ++L+V +NK Sbjct: 43734 RDFIKNMITGTSQVDCAVLLVAAGVGEFEAVISKNGQTRE-HALLAYTLGVKQLIVGVNK 43910 Query: 148 ID 149 +D Sbjct: 43911 MD 43916 >gi|408541797|gb|JH947135.1| Elephantulus edwardii unplaced genomic scaffold scaffold00006, whole genome shotgun sequence Length = 36716983 Score = 36.2 bits (82), Expect = 5.4 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D PGH I+ +I G D +L++ ++K QT+ L+ + Sbjct: 34809302 VTVIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLACTLGV 34809478 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKM 167 ++L+V +NK+D Q +++ K++ Sbjct: 34809479 KQLIVGVNKMDSTEPPYSQKRYEEIVKEV 34809565 >gi|408541637|gb|JH947295.1| Elephantulus edwardii unplaced genomic scaffold scaffold00166, whole genome shotgun sequence Length = 7886643 Score = 35.8 bits (81), Expect = 7.1 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 8/88 (9%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQ 139 VT++D PGH I+ +I G D +L++ + G+ C L+ + + Sbjct: 2149261 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTCEHALLAYTLGVK 2149082 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKM 167 +L+V +NK+D Q +++ K++ Sbjct: 2149081 QLIVGVNKMDSTEPPYSQKRYEEIVKEV 2148998 >gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genomic scaffold scaffold00002, whole genome shotgun sequence Length = 47609318 Score = 35.8 bits (81), Expect = 7.1 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D G+ Q+ L K V+++NK Sbjct: 20927054 INLIDSPGHVDFSSEVTAALRVTDRALVVVDCVSGVCVQTETVLPQAIAEHIKPVLMMNK 20927233 Query: 148 ID--LLPEGKRQAAIDKMTKKMQKTLEN 173 ID LL + Q +++ + Q+ +EN Sbjct: 20927234 IDRALL---ELQLEPEELYQTFQRIVEN 20927308 Score = 35.8 bits (81), Expect = 7.1 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 + L+D PGH + ++ D ++V+D G+ Q+ L K V+++NK Sbjct: 20942022 INLIDSPGHVDFSSEVTAALRVTDRALVVVDCVSGVCVQTETVLPQAIAEHIKPVLMMNK 20942201 Query: 148 ID--LLPEGKRQAAIDKMTKKMQKTLEN 173 ID LL + Q +++ + Q+ +EN Sbjct: 20942202 IDRALL---ELQLEPEELYQTFQRIVEN 20942276 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 3,699,102,358 Number of sequences in database: 427 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa.01 Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 144,880,503 Number of sequences in database: 8341 Lambda K H 0.323 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,682,773,826 Number of Sequences: 8768 Number of extensions: 23779223 Number of successful extensions: 80348 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 270 Number of HSP's successfully gapped in prelim test: 119 Number of HSP's that attempted gapping in prelim test: 67297 Number of HSP's gapped (non-prelim): 38322 length of query: 436 length of database: 1,281,327,620 effective HSP length: 137 effective length of query: 299 effective length of database: 1,280,126,404 effective search space: 382757794796 effective search space used: 382757794796 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 80 (35.4 bits)