genewise output Score 1145.19 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000144_2.0 1 MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITL gi|408541642|gb99964 aggccgagagggcgcagagaagcgcgcaaagtaggtgacccacgcgaac tcgggtatatgttgataggacctcgctgccccccctaaacaggaggtct gcggggtgtgcggtcccctagggggtacctcccccctagggctgcccgc SPP00000144_2.0 50 DLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTLVDCPGHAS DLGFSCF VPLP RLRS+LP AA EA EP EP LQVTLVDCPGHAS DLGFSCFCVPLPERLRSALP--VAASEARSEPAEPQLQVTLVDCPGHAS gi|408541642|g100111 gcgtttttgcccgccctgcc gggtggatgcggccccgacggtcgcgt atgtcgtgtctcagtgcctc tcccacgcaccacatatcttagcgacc cgcctcctgagcgtgggggc gggcgcgcgcggtgggcggcctggccc SPP00000144_2.0 99 LIRTIIG AQIIDLMMLVIDVTKG LIRTIIG AQIIDLMMLVIDVTKG LIRTIIG G:G[gga] AQIIDLMMLVIDVTKG gi|408541642|g100252 caaaaagGGTGAGCG Intron 1 TAGGAgcaagcaacgaggaag ttgcttg <1-----[100274:26851-1> cattattttttatcag ctgccac cgcttagggcctgcgg SPP00000144_2.0 123 MQTQSAECLVIGQIACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTL MQTQSAECLVIGQIACQKL+VVLNKIDLL EGKRQAAIDKMTKKMQKTL MQTQSAECLVIGQIACQKLLVVLNKIDLLAEGKRQAAIDKMTKKMQKTL gi|408541642|g268569 acactggtcgagcagtcaccggcaaagctgggaacggagaaaaaacaac tacaccagtttgatcgaatttttaatattcagagacctaatcaataact ggagaaacagtcgtccgggcgcgcaaccacgcgagaattagcgagggca SPP00000144_2.0 172 ENT FRGAPIIPVAAKPGGPEAPE ENT FRGAPIIPVAAKPGGPEAPE ENT K:K[aag] FRGAPIIPVAAKPGGPEAPE gi|408541642|g268716 gaaAAGTAGGTT Intron 2 TAGGtcggcaacgggacggcggcg aac <2-----[268727:29564-2> tggccttctccacggcacca gcc taaggcatggggtgaagata SPP00000144_2.0 196 TEAPQGIPELIE LLTSQISIPTRDPS TEAPQGI ELIE LL SQISIPTRDPS TEAPQGISELIE LLKSQISIPTRDPS gi|408541642|g295708 aggccgatgcagGTATTGC Intron 3 TAGccatcatacaagct caccagtcatta<0-----[295744:30133-0>ttacatctccgacc aatagccagttg cggcgtccggatag SPP00000144_2.0 222 GPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALK GPFLMSVDHCFSIKGQGTVMTGTILSGS+ L DSVEIPALK GPFLMSVDHCFSIKGQGTVMTGTILSGSVHLSDSVEIPALK gi|408541642|g301377 gctcatggctttaagcgagaagaactgtgccagaggacgca gctttctaagtctagagcttcgcttcgctatgagtatccta aaccgtgccccccgcactggaacccccctcccctagttccg SPP00000144_2.0 263 VVKKVKSMQMFHMPITSAMQGDRLGI VVKKVKSMQMFHMPITSAMQGDRLG+ VVKKVKSMQMFHMPITSAMQGDRLGL gi|408541642|g301500 GTCAGTC Intron 4 CAGggaagatacatcacaatgacggccgt <0-----[301500:39883-0>ttaatactattatctccctagagtgt gagatgagggccgccaacgaacagca SPP00000144_2.0 289 CVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHI CVTQFDPK LERGLVCAPESLHT+HAA++SVEKIPYFRG LQTKAKFHI CVTQFDPKSLERGLVCAPESLHTIHAAIVSVEKIPYFRGALQTKAKFHI gi|408541642|g398917 tgactgcatcgcgcgtgcgtccaacggagtggaacttcggtcaagatca gtcatacactaggttgccactactaccttctaatcatggctacacatat tgcgtctagggcgggttcgcgtcctacttcgggcgtcggcgacgcgccc SPP00000144_2.0 338 TVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLTP TVGHETVMGRLMFFSP P+NF EP+LDSF+FS EYLFQEQ+L KDL P TVGHETVMGRLMFFSPTPENFSHEPVLDSFDFSHEYLFQEQFLCKDLVP gi|408541642|g399064 aggcgagagccattacacgatacgcgcgttgttcgtctcgctctagcgc ctgaacttggttttgcccaatgaacttactatcaaattaaattgaattc agccgacgggcgcccgccgccccgtggcgtccgtgcccgggcgcgcggc SPP00000144_2.0 387 AVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDA TD EA+++AGQ TEG CP+QQWALVEFEK VTCPRLCL+IGSRLDA --TDGSEANQQAGQTTEGQCPQQQWALVEFEKAVTCPRLCLLIGSRLDA gi|408541642|g399211 aggaggaccggcaaggctcccctgcggtgaggatccctccagtccgg caggacaaacgaccagagcaaagcttataactcgcgtgtttgcgtac atccgccggttgcggcgccggggccggtggtccctcccggcccgctc SPP00000144_2.0 436 DIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER DIH NTCRLAFHG LLHGLED++YA+S LP+LKVYKLKHK GLVER DIHANTCRLAFHGTLLHGLEDKHYAESSLPKLKVYKLKHKQGLVER gi|408541642|g399352 gacgaatccgtcgacccgcggactggatccacagtacacacgcggc atacacggtctagcttagtaaaaacagctcatataataaaagttag ctcacccggcccgctgcgggcgctcgctgcggggcgggcaaccggg SPP00000144_2.0 482 AMDDYSVIGRSLFKKETNIQLFVGLK MDDYSVIGRSLFKKETNIQLFVGLK VMDDYSVIGRSLFKKETNIQLFVGLK gi|408541642|g399490 GTGAGTC Intron 5 CAGgaggtagagctctaagaaacctggca <0-----[399490:42319-0>ttaaagttggcttaaacatatttgta agtcctgtcccgcaggcccgccgacg SPP00000144_2.0 508 VHLSTGELGIIDSAFGQSGKFKIHIP VHLSTGE G+IDSAFGQSGKFK+HIP VHLSTGEQGVIDSAFGQSGKFKVHIP G:G[ggt] gi|408541642|g423273 gcctaggcggagagtgcagatagcacGGTAAGTG Intron 6 tatccgaagttagctgaggatatatc <1-----[423352:484561 gcggtcgggctccctcgtcgcaccct SPP00000144_2.0 534 GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLS GLSPES+K+L P +KKR R GRGEAT++EE ER EP+Q V LS GLSPESRKMLAPGVKKRGRGGRGEATKEEEGVERPEPAQPVTLS gi|408541642|g484559 TAGGTgcacgtaaacgcggaacgcggcgggaaggggggccgcgccgaca -1> gtgcacgattccgtaagggggggaccaaaagtagcaccactctg cccagcggggaaacgggcatcagagcaaggtgggagcagtcgcc SPP00000144_2.0 579 LTFKRYVFDTHKRMVQSP LTFKRYVFDT KRM+QSP LTFKRYVFDTQKRMIQSP gi|408541642|g484696 catactgtgacacaactc tctagattacaagttacc gccgctcctcagcgtgac // Making a G in phase 1 intron Making a K in phase 2 intron Making a G in phase 1 intron >gi|408541642|gb|JH947290.1|:subseq(6361554,584749).pep MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFCVPL PERLRSALPVAASEARSEPAEPQLQVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG MQTQSAECLVIGQIACQKLLVVLNKIDLLAEGKRQAAIDKMTKKMQKTLENTKFRGAPII PVAAKPGGPEAPETEAPQGISELIELLKSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT GTILSGSVHLSDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGLCVTQFDPKSLERGL VCAPESLHTIHAAIVSVEKIPYFRGALQTKAKFHITVGHETVMGRLMFFSPTPENFSHEP VLDSFDFSHEYLFQEQFLCKDLVPTDGSEANQQAGQTTEGQCPQQQWALVEFEKAVTCPR LCLLIGSRLDADIHANTCRLAFHGTLLHGLEDKHYAESSLPKLKVYKLKHKQGLVERVMD DYSVIGRSLFKKETNIQLFVGLKVHLSTGEQGVIDSAFGQSGKFKVHIPGGLSPESRKML APGVKKRGRGGRGEATKEEEGVERPEPAQPVTLSLTFKRYVFDTQKRMIQSP // >gi|408541642|gb|JH947290.1|:subseq(6361554,584749).[99964:484749].sp ATGGCCGGGCGGCGGGTGAATGTGAATGTGGGCGTGCTGGGTCACATCGACAGCGGTAAA ACGGCGCTGGCGCGGGCTCTAAGCACCACTGCCTCCACCGCCGCCTTCGATAAACAGCCG CAGAGCCGTGAGCGCGGCATCACGCTCGACCTGGGCTTCTCTTGCTTCTGTGTGCCACTG CCCGAGCGTCTGCGGTCGGCGCTGCCCGTGGCGGCGTCCGAGGCCAGGTCCGAGCCCGCG GAGCCTCAGCTGCAGGTCACGCTGGTCGACTGTCCGGGGCACGCCTCCCTCATTAGGACC ATCATAGGCGGAGCCCAGATCATTGATCTAATGATGCTGGTCATCGATGTGACCAAGGGG ATGCAGACACAGTCAGCAGAATGCCTAGTGATTGGCCAGATTGCCTGCCAGAAGCTGCTC GTGGTCCTGAACAAAATAGACCTCTTAGCCGAGGGCAAGAGACAGGCAGCAATTGATAAA ATGACCAAGAAAATGCAGAAGACCCTAGAGAACACCAAGTTTCGAGGAGCGCCGATCATA CCTGTGGCGGCGAAGCCTGGGGGACCAGAGGCACCTGAAACAGAAGCTCCACAGGGCATC TCAGAGCTTATTGAGCTCCTGAAGTCCCAGATTTCCATCCCGACGAGAGATCCATCGGGA CCATTCCTCATGTCTGTGGACCACTGCTTCTCCATCAAGGGCCAAGGCACTGTGATGACA GGAACCATCCTCTCCGGCTCCGTTCACCTCAGCGACAGTGTAGAGATTCCTGCCCTCAAG GTGGTAAAGAAAGTTAAGTCAATGCAGATGTTCCACATGCCCATCACATCAGCCATGCAA GGAGACCGACTGGGCTTATGTGTGACCCAGTTTGACCCTAAATCGCTGGAGCGCGGGCTG GTGTGTGCTCCCGAGTCCCTGCATACCATCCATGCAGCCATTGTTTCCGTGGAGAAGATC CCGTATTTCCGGGGGGCCTTGCAAACCAAGGCCAAGTTCCACATCACAGTGGGCCACGAG ACAGTCATGGGGCGGCTCATGTTCTTCAGCCCGACCCCCGAGAACTTCAGCCACGAGCCT GTGCTGGACTCGTTTGACTTCTCGCATGAGTACCTCTTCCAGGAGCAGTTCCTGTGCAAG GACCTGGTGCCCACAGATGGCAGCGAGGCCAACCAGCAGGCTGGTCAGACCACGGAGGGC CAGTGCCCCCAGCAGCAGTGGGCCCTCGTGGAGTTTGAGAAGGCTGTCACCTGCCCTCGC CTCTGCCTGCTGATCGGCTCCCGGCTCGATGCCGACATTCACGCAAACACCTGCCGGCTG GCCTTCCACGGGACCCTTCTGCACGGGCTGGAGGACAAGCACTATGCCGAGAGCTCTCTG CCCAAGCTGAAGGTGTACAAGCTGAAGCACAAACAAGGCCTCGTGGAGCGGGTAATGGAT GACTACAGTGTGATTGGCCGCTCCCTGTTCAAAAAGGAGACCAACATCCAGCTCTTCGTG GGACTCAAGGTGCACCTGTCGACTGGCGAGCAGGGGGTCATTGACAGCGCCTTTGGCCAG AGTGGCAAGTTCAAAGTCCACATCCCTGGTGGCCTCAGCCCAGAGTCCAGGAAGATGCTG GCACCAGGAGTCAAGAAGCGGGGCCGAGGTGGCCGAGGGGAAGCGACCAAAGAAGAGGAG GGTGTGGAGCGGCCAGAGCCCGCACAGCCTGTCACGCTCAGCCTGACCTTCAAGCGCTAT GTCTTCGATACCCAAAAGCGCATGATTCAGTCACCC // gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise match 99964 484749 1147.18 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 99964 100273 0.00 + 0 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 100274 268518 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 268519 268726 0.00 + 2 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 268727 295646 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 295647 295743 0.00 + 1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 295744 301334 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 301335 301499 0.00 + 0 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 301500 398838 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 398839 399489 0.00 + 0 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 399490 423194 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 423195 423351 0.00 + 0 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise intron 423352 484561 0.00 + . gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 gi|408541642|gb|JH947290.1|:subseq(6361554,584749) GeneWise cds 484562 484749 0.00 + 2 gi|408541642|gb|JH947290.1|:subseq(6361554,584749)-genewise-prediction-1 //