TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000144_2.0 # Protein # Eukaryotic elongation factor (eEFSec) # Human (Homo sapiens) (596 letters) Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome .fa 8768 sequences; 3,843,982,861 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|408541642|gb|JH947290.1| Elephantulus edwardii unplaced genom... 387 e-105 gi|408541285|gb|JH947647.1| Elephantulus edwardii unplaced genom... 92 1e-16 gi|408541684|gb|JH947248.1| Elephantulus edwardii unplaced genom... 65 2e-08 gi|408541797|gb|JH947135.1| Elephantulus edwardii unplaced genom... 63 6e-08 gi|408541466|gb|JH947466.1| Elephantulus edwardii unplaced genom... 63 8e-08 gi|408541751|gb|JH947181.1| Elephantulus edwardii unplaced genom... 62 1e-07 gi|408541717|gb|JH947215.1| Elephantulus edwardii unplaced genom... 61 3e-07 gi|408541784|gb|JH947148.1| Elephantulus edwardii unplaced genom... 60 4e-07 gi|408541707|gb|JH947225.1| Elephantulus edwardii unplaced genom... 59 9e-07 gi|408541637|gb|JH947295.1| Elephantulus edwardii unplaced genom... 58 3e-06 gi|408541555|gb|JH947377.1| Elephantulus edwardii unplaced genom... 56 1e-05 gi|408541433|gb|JH947499.1| Elephantulus edwardii unplaced genom... 54 4e-05 gi|408541746|gb|JH947186.1| Elephantulus edwardii unplaced genom... 52 2e-04 gi|408541710|gb|JH947222.1| Elephantulus edwardii unplaced genom... 51 3e-04 gi|408541582|gb|JH947350.1| Elephantulus edwardii unplaced genom... 50 6e-04 gi|408541755|gb|JH947177.1| Elephantulus edwardii unplaced genom... 50 7e-04 gi|408541735|gb|JH947197.1| Elephantulus edwardii unplaced genom... 49 0.001 gi|408541800|gb|JH947132.1| Elephantulus edwardii unplaced genom... 49 0.002 gi|408541802|gb|JH947130.1| Elephantulus edwardii unplaced genom... 48 0.002 gi|408541610|gb|JH947322.1| Elephantulus edwardii unplaced genom... 47 0.004 gi|408541753|gb|JH947179.1| Elephantulus edwardii unplaced genom... 47 0.004 gi|408541510|gb|JH947422.1| Elephantulus edwardii unplaced genom... 47 0.006 gi|408541562|gb|JH947370.1| Elephantulus edwardii unplaced genom... 47 0.006 gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genom... 46 0.010 gi|408541478|gb|JH947454.1| Elephantulus edwardii unplaced genom... 45 0.014 gi|408541752|gb|JH947180.1| Elephantulus edwardii unplaced genom... 45 0.014 gi|408541237|gb|JH947695.1| Elephantulus edwardii unplaced genom... 43 0.067 gi|408541243|gb|JH947689.1| Elephantulus edwardii unplaced genom... 43 0.088 gi|408541338|gb|JH947594.1| Elephantulus edwardii unplaced genom... 42 0.12 gi|408541530|gb|JH947402.1| Elephantulus edwardii unplaced genom... 42 0.12 gi|408541470|gb|JH947462.1| Elephantulus edwardii unplaced genom... 42 0.20 gi|408541711|gb|JH947221.1| Elephantulus edwardii unplaced genom... 41 0.33 gi|408541763|gb|JH947169.1| Elephantulus edwardii unplaced genom... 38 2.2 gi|408541616|gb|JH947316.1| Elephantulus edwardii unplaced genom... 38 2.8 gi|408541744|gb|JH947188.1| Elephantulus edwardii unplaced genom... 38 2.8 gi|408541576|gb|JH947356.1| Elephantulus edwardii unplaced genom... 37 3.7 gi|408541792|gb|JH947140.1| Elephantulus edwardii unplaced genom... 37 4.8 gi|408541634|gb|JH947298.1| Elephantulus edwardii unplaced genom... 37 6.3 >gi|408541642|gb|JH947290.1| Elephantulus edwardii unplaced genomic scaffold scaffold00161, whole genome shotgun sequence Length = 7648478 Score = 387 bits (994), Expect = e-105 Identities = 188/240 (78%), Positives = 210/240 (87%), Gaps = 5/240 (2%) Frame = +1 Query: 247 SGSISLGDSVE-----IPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERG 301 S S+ LG + + +L+VVKKVKSMQMFHMPITSAMQGDRLG+CVTQFDPK LERG Sbjct: 6760330 SASVPLGSLCDPFLTSLFSLQVVKKVKSMQMFHMPITSAMQGDRLGLCVTQFDPKSLERG 6760509 Query: 302 LVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFHITVGHETVMGRLMFFSPAPDNFDQE 361 LVCAPESLHT+HAA++SVEKIPYFRG LQTKAKFHITVGHETVMGRLMFFSP P+NF E Sbjct: 6760510 LVCAPESLHTIHAAIVSVEKIPYFRGALQTKAKFHITVGHETVMGRLMFFSPTPENFSHE 6760689 Query: 362 PILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQATEGHCPRQQWALVEFEKPVT 421 P+LDSF+FS EYLFQEQ+L KDL P TD EA+++AGQ TEG CP+QQWALVEFEK VT Sbjct: 6760690 PVLDSFDFSHEYLFQEQFLCKDLVP--TDGSEANQQAGQTTEGQCPQQQWALVEFEKAVT 6760863 Query: 422 CPRLCLVIGSRLDADIHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER 481 CPRLCL+IGSRLDADIH NTCRLAFHG LLHGLED++YA+S LP+LKVYKLKHK GLVER Sbjct: 6760864 CPRLCLLIGSRLDADIHANTCRLAFHGTLLHGLEDKHYAESSLPKLKVYKLKHKQGLVER 6761043 Score = 132 bits (333), Expect = 6e-29 Identities = 70/83 (84%), Positives = 76/83 (91%), Gaps = 3/83 (3%) Frame = +3 Query: 96 HASLIRTIIG---GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLP 152 ++++I T+ GAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKL+VVLNKIDLL Sbjct: 6630033 YSNIILTLFSFLLGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLLVVLNKIDLLA 6630212 Query: 153 EGKRQAAIDKMTKKMQKTLENTK 175 EGKRQAAIDKMTKKMQKTLENTK Sbjct: 6630213 EGKRQAAIDKMTKKMQKTLENTK 6630281 Score = 105 bits (262), Expect = 1e-20 Identities = 52/56 (92%), Positives = 53/56 (94%) Frame = +3 Query: 208 LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKV 263 LL SQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGS+ L DSVEIPALKV Sbjct: 6662889 LLKSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSVHLSDSVEIPALKV 6663056 Score = 103 bits (258), Expect = 3e-20 Identities = 49/54 (90%), Positives = 52/54 (96%) Frame = +3 Query: 481 RAMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPG 534 + MDDYSVIGRSLFKKETNIQLFVGLKVHLSTGE G+IDSAFGQSGKFK+HIPG Sbjct: 6784746 QVMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGEQGVIDSAFGQSGKFKVHIPG 6784907 Score = 102 bits (254), Expect = 9e-20 Identities = 57/94 (60%), Positives = 58/94 (61%) Frame = +1 Query: 13 LGHIDSGKXXXXXXXXXXXXXXXFDKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXX 72 LGHIDSGK FDKQPQSRERGITLDLGFSCF VPLP RLRS+ Sbjct: 6461554 LGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFCVPLPERLRSA--LPV 6461727 Query: 73 XXXXXXXXXXXXXXQVTLVDCPGHASLIRTIIGG 106 QVTLVDCPGHASLIRTIIGG Sbjct: 6461728 AASEARSEPAEPQLQVTLVDCPGHASLIRTIIGG 6461829 Score = 99.0 bits (245), Expect = 1e-18 Identities = 46/63 (73%), Positives = 53/63 (84%) Frame = +1 Query: 534 GGLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLTFKRYVFDTHKRMV 593 GGLSPES+K+L P +KKR R GRGEAT++EE ER EP+Q V LSLTFKRYVFDT KRM+ Sbjct: 6846115 GGLSPESRKMLAPGVKKRGRGGRGEATKEEEGVERPEPAQPVTLSLTFKRYVFDTQKRMI 6846294 Query: 594 QSP 596 QSP Sbjct: 6846295 QSP 6846303 >gi|408541285|gb|JH947647.1| Elephantulus edwardii unplaced genomic scaffold scaffold00518, whole genome shotgun sequence Length = 541856 Score = 92.0 bits (227), Expect = 1e-16 Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Frame = +2 Query: 92 DCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDL 150 DCPGH ++ +I G +D +LV+ G Q+ E L++ QI + +VV +NK D Sbjct: 368408 DCPGHEDYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAIQIGVEHIVVYVNKADA 368587 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKFRG--APIIPVXXXXXXXXXXXXXXXXXIPELIEL 208 + + + ++ + ++++ L ++G P+I + +L++ Sbjct: 368588 VQDSEM---VELVELEIRELLTEFGYKGDETPVIVGSALCALEQRDPELGLKSVQKLLDA 368758 Query: 209 LTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEI--PALKVVKK 266 + + I +PTRD P L+ V +SI G+GTV+TGT+ G + G+ E + + Sbjct: 368759 VDTHIPVPTRDLEKPLLLPVGSIYSIPGRGTVVTGTLERGILKKGEECEFLGHSKNIRTV 368938 Query: 267 VKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA 305 V +M H + A GD LG V + L RGLV A Sbjct: 368939 VTGTEMLHKSLDRAEAGDNLGALVQSLKREDLRRGLVMA 369055 >gi|408541684|gb|JH947248.1| Elephantulus edwardii unplaced genomic scaffold scaffold00119, whole genome shotgun sequence Length = 11376822 Score = 65.1 bits (157), Expect = 2e-08 Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 25/292 (8%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F VT++D PGH Sbjct: 3115453 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDGPGH 3115557 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 ++ +I G D +L++ ++K QT S L+ + ++L+V +NK Sbjct: 3115558 RDFMKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQT-SEHALLAYTLGVKQLIVGVNK 3115734 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXIP-- 203 +D Q +++ K++ ++ + + +P+ Sbjct: 3115735 MDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGW 3115914 Query: 204 ------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251 L+E L I PTR P + + + I G GTV G + +G + Sbjct: 3115915 KVTWKDGSASGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 3116091 Query: 252 LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 G V + V +VKS++M H ++ A+ GD +G V K + RG V Sbjct: 3116092 PGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNV 3116247 >gi|408541797|gb|JH947135.1| Elephantulus edwardii unplaced genomic scaffold scaffold00006, whole genome shotgun sequence Length = 36716983 Score = 63.2 bits (152), Expect = 6e-08 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 25/241 (10%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D PGH I+ +I G D +L++ ++K QT+ L+ + Sbjct: 34809302 VTVIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLACTLGV 34809478 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXX 196 ++L+V +NK+D Q +++ K++ ++ + + +P+ Sbjct: 34809479 KQLIVGVNKMDSTEPPYSQKRYEEIVKEVNTYIKKIGYNPDTVAFVPISGWNGDNMLEPS 34809658 Query: 197 XXXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT 242 L+E L I PTR P + + ++I G GTV Sbjct: 34809659 ANMPWFKGWKVTQKDGSAGGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYNIGGIGTVPV 34809835 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 G + +G + G V + V +VKS++M H ++ A+ GD +G + K + RG Sbjct: 34809836 GRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDSVGFNIKNVSVKDVRRGN 34810015 Query: 303 V 303 V Sbjct: 34810016 V 34810018 >gi|408541466|gb|JH947466.1| Elephantulus edwardii unplaced genomic scaffold scaffold00337, whole genome shotgun sequence Length = 2447256 Score = 62.8 bits (151), Expect = 8e-08 Identities = 63/292 (21%), Positives = 110/292 (37%), Gaps = 25/292 (8%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F VT++D PGH Sbjct: 296217 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDAPGH 296321 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L++ ++K QT+ L+ + ++L+V +NK Sbjct: 296322 RDFIKNMITGTSQADCAVLIVAAGVGEFETGISKNGQTRE-HALLAYTLGVKQLIVGVNK 296498 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI--- 202 +D Q +++ K++ ++ + + +P+ Sbjct: 296499 MDSTEPPYSQKRYEEIVKEVITYIKKIGYNPDTVAFVPISGWIGDNMLEPSANMPWFKGR 296678 Query: 203 -----------PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251 L+E L I PT P + + + I G GTV G + +G + Sbjct: 296679 KVTRKDGSASGTTLLEALDC-ILPPTHPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 296855 Query: 252 LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 G V + V ++KS++M H ++ A+ GD +G V K + RG V Sbjct: 296856 PGMVVTFAPVNVTTELKSVEMHHEALSEALSGDNVGFNVKNVSVKDVRRGNV 297011 >gi|408541751|gb|JH947181.1| Elephantulus edwardii unplaced genomic scaffold scaffold00052, whole genome shotgun sequence Length = 18130215 Score = 62.0 bits (149), Expect = 1e-07 Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 5/188 (2%) Frame = +2 Query: 92 DCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDL 150 D PGHA ++ +I G +D +LV+ G Q+ E L++ QI + VV +NK D Sbjct: 6594773 DRPGHADYVKNMITGTAPLDSYVLVVATKDGPMPQT*EHLLLAKQIGVEHSVVYVNKADD 6594952 Query: 151 LPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPELIELLT 210 + + ++ ++ T +K P+I + +L++ + Sbjct: 6594953 AQDSEMVELVELEIWELL-TEFGSKGEETPVIVGFALCALEQRDPELGLKLV*KLLDAVD 6595129 Query: 211 SQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSM 270 + I +PTR+ PFL+ V+ +SI G G V TGT+L + L E L K ++++ Sbjct: 6595130 THIPVPTRNLEKPFLLPVESIYSIPGWGMVATGTLLERGV-LKKREECEFLGHSKNIRTV 6595306 Query: 271 ----QMFH 274 +MFH Sbjct: 6595307 VPGTEMFH 6595330 >gi|408541717|gb|JH947215.1| Elephantulus edwardii unplaced genomic scaffold scaffold00086, whole genome shotgun sequence Length = 13901021 Score = 60.8 bits (146), Expect = 3e-07 Identities = 65/292 (22%), Positives = 106/292 (36%), Gaps = 25/292 (8%) Frame = +2 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK ERGIT+D+ F VT++D PGH Sbjct: 11604458 DKLKAEHERGITIDISLWKFETS-------------------------KYYVTIIDGPGH 11604562 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L++ ++K QT L + L+V +NK Sbjct: 11604563 RDFIKNMITGTSQADCAVLIVAAGVGKCEAGISKNGQTCEHARLAY-TLGVTPLIVGVNK 11604739 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXIP-- 203 +D Q +++ K++ ++ + + +P+ Sbjct: 11604740 MDSTEPPYSQKRYEEIAKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGW 11604919 Query: 204 ------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSIS 251 L+E L I PTR P + + + I G GTV G + +G + Sbjct: 11604920 KVTRKDDSASGTTLLEALDC-ILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 11605096 Query: 252 LGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 G V + V KVKS++M H ++ A+ GD +G V K + RG V Sbjct: 11605097 PGMVVTFAPVNVTTKVKSVEMHHEALSEALPGDNVGFNVKNISVKDVRRGNV 11605252 >gi|408541784|gb|JH947148.1| Elephantulus edwardii unplaced genomic scaffold scaffold00019, whole genome shotgun sequence Length = 28214911 Score = 60.5 bits (145), Expect = 4e-07 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%) Frame = +1 Query: 202 IPELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEI--P 259 + +L++ + + I +PTRD PFL+ V+ +SI G G V+TGT+ G + G+ E Sbjct: 8109742 VQKLLDAVDTHIPVPTRDLEKPFLLPVESVYSIPG*GMVVTGTLEHGILKKGEECEFLGH 8109921 Query: 260 ALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESL 309 + + V S++MFH + A GD LG V + L+R ++ P S+ Sbjct: 8109922 SKNIRTVVTSIEMFHKSLNRAEAGDNLGALV-----RGLKREVMAKPGSI 8110056 Score = 44.7 bits (104), Expect = 0.023 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Frame = +3 Query: 92 DCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIG-QIACQKLVVVLNKIDL 150 DCPGHA ++ +I G +D +LV+ G Q+ E L++ QI + +VV +NK D Sbjct: 8109414 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHIVVYVNKADA 8109593 Query: 151 LPEGKRQA 158 + + +A Sbjct: 8109594 VQDSDGRA 8109617 >gi|408541707|gb|JH947225.1| Elephantulus edwardii unplaced genomic scaffold scaffold00096, whole genome shotgun sequence Length = 13193485 Score = 59.3 bits (142), Expect = 9e-07 Identities = 60/233 (25%), Positives = 103/233 (44%), Gaps = 23/233 (9%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ VDCPGH L+ T++ GA ++D +L+I + Q Q++E L +I V++L Sbjct: 4510775 VSFVDCPGHDILMATLLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLMHVLILQ 4510954 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXXXIPEL 205 NKIDL+ E + +++ +Q T+ GAPII + I + Sbjct: 4510955 NKIDLVKES*AKEQYEQILAFVQGTVA----EGAPIISI----------SAQLKYNIEVV 4511092 Query: 206 IELLTSQISIPTRDPSGPFLMSVDHCFSIKG--------QGTVMTGTILSGSISLGDSVE 257 E + +I +P RD + + V F + +G V +IL G + +G +E Sbjct: 4511093 CEYIVKKIPVPLRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGSSILKGVLKVGQEIE 4511272 Query: 258 I-PAL------------KVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKL 297 + P + + K+ S+ H + A G +G+ T+ DP L Sbjct: 4511273 VRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYASPGRLIGV-GTKIDPTL 4511428 >gi|408541637|gb|JH947295.1| Elephantulus edwardii unplaced genomic scaffold scaffold00166, whole genome shotgun sequence Length = 7886643 Score = 57.8 bits (138), Expect = 3e-06 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 24/240 (10%) Frame = -3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQ 139 VT++D PGH I+ +I G D +L++ + G+ C L+ + + Sbjct: 2149261 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTCEHALLAYTLGVK 2149082 Query: 140 KLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXX 197 +L+V +NK+D Q +++ K++ ++ + + +P+ Sbjct: 2149081 QLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVDFVPISGWNGDNMLEPSA 2148902 Query: 198 XXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTG 243 L+E L I PT P + + + I G GTV G Sbjct: 2148901 HMPLFKGWKVTRKDGSASGTTLLEALDC-ILPPTHPTDKPLHLPLQDVYKIGGIGTVPVG 2148725 Query: 244 TILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLV 303 + +G + G V + V +VKS++M ++ A+ GD +G V K + RG V Sbjct: 2148724 RVETGVLKPGMVVTFAPVNVTTEVKSVEMHREALSEALPGDNVGFNVKNVSVKDVRRGNV 2148545 >gi|408541555|gb|JH947377.1| Elephantulus edwardii unplaced genomic scaffold scaffold00248, whole genome shotgun sequence Length = 4551794 Score = 55.8 bits (133), Expect = 1e-05 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 25/241 (10%) Frame = +1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT+ D P H I+ +I G ML++ ++K QT+ L+ + Sbjct: 4530055 VTITDAPRHRDFIKNMITGTSQAGCAMLIVVAGVGEFEAGISKNGQTRE-HALLAYTLGV 4530231 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXX 196 ++L+V +NK+D Q +++ K++ ++ + + +P+ Sbjct: 4530232 KQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKVGYNPDTVAFVPISGWNGDNMLEPS 4530411 Query: 197 XXXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT 242 L+E L I PT P + + + I G GTV Sbjct: 4530412 ANMPSFKGWKVTRKDGSASGTTLLEALDC-ILPPTHPTDKPLHLPLRDVYKIGGIGTVAV 4530588 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 G + +G + G V + V +VKS++M H ++ A+ GD +G V K + RG Sbjct: 4530589 GRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEAMSEALPGDSVGFNVKNVSVKNVRRGN 4530768 Query: 303 V 303 V Sbjct: 4530769 V 4530771 >gi|408541433|gb|JH947499.1| Elephantulus edwardii unplaced genomic scaffold scaffold00370, whole genome shotgun sequence Length = 1848613 Score = 53.9 bits (128), Expect = 4e-05 Identities = 57/273 (20%), Positives = 105/273 (38%), Gaps = 25/273 (9%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D PGH I+ +I G + +L++ ++K QT+ L+ ++ Sbjct: 1732451 VTIIDAPGHRYFIKNMITGTSQAECAVLIVAAGVGEFEAGISKNGQTRE-HALLAYKLGV 1732627 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXX 196 ++L+V +NK+D Q +++ ++ ++ + + +P+ Sbjct: 1732628 KQLIVGVNKMDSTKPPYSQKRYEEIVMEISTYIKKIGYNPDTVAFVPISGWNGDNMLEPS 1732807 Query: 197 XXXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT 242 L+E L I PT+ P + + I G GTV Sbjct: 1732808 ANMPWFKGWKVTQEDDSASGTTLLEAL-D*ILPPTQRTDKPLHLPRQDVYKIGGIGTVPV 1732984 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 G + G + G V + V +VKS+ M H ++ A+ GD +G V K ++RG Sbjct: 1732985 GRVEPGVLKPGMVVTFTPVNVTTEVKSV*MHHEALSEALPGDNVGFNVKNVSVKDVQRGN 1733164 Query: 303 VCAPESLHTVHAALISVEKIPYFRGPLQTKAKF 335 V A S ++ P Q A + Sbjct: 1733165 VAGDSKNEPPMEAAGSTTQVIILNHPGQISAGY 1733263 >gi|408541746|gb|JH947186.1| Elephantulus edwardii unplaced genomic scaffold scaffold00057, whole genome shotgun sequence Length = 17858683 Score = 51.6 bits (122), Expect = 2e-04 Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 25/221 (11%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D GH I+ +I G D +L++ ++K QT+ L+ + Sbjct: 2187636 VTIIDASGHRDFIKNMIIGTSQADCAVLIVAAGVGEFEAGISKNGQTRE-HALLAYTLGV 2187812 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXX 196 ++L+V +NK+D Q +++ K++ ++ + + +PV Sbjct: 2187813 KQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPVSGWNGDNMLEPS 2187992 Query: 197 XXXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT 242 L E L I PTR P + + + I G GTV Sbjct: 2187993 ANMPWFKGWKVTQKDASASGTTLFEALDC-ILPPTRPTDNPLCLPLQDVYKIGGIGTVPV 2188169 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQG 283 G + +G + G V + V +VKS++M H ++ A+ G Sbjct: 2188170 GRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPG 2188292 >gi|408541710|gb|JH947222.1| Elephantulus edwardii unplaced genomic scaffold scaffold00093, whole genome shotgun sequence Length = 13294943 Score = 50.8 bits (120), Expect = 3e-04 Identities = 28/88 (31%), Positives = 44/88 (50%) Frame = -3 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PTR P + + + I G GTV G + +G + G V + V +VKS++M H Sbjct: 11779740 PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHE 11779561 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K ++RG V Sbjct: 11779560 ALSEALPGDNVGFNVKNVSVKDVQRGNV 11779477 >gi|408541582|gb|JH947350.1| Elephantulus edwardii unplaced genomic scaffold scaffold00221, whole genome shotgun sequence Length = 5055060 Score = 50.1 bits (118), Expect = 6e-04 Identities = 28/88 (31%), Positives = 44/88 (50%) Frame = +3 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PTR P + + + I G GTV G + +G + G V + V +VKS++M H Sbjct: 3818946 PTRPTDKPLHLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHE 3819125 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V + K + RG V Sbjct: 3819126 ALSEALPGDNVGFNVKKVSVKDVRRGNV 3819209 >gi|408541755|gb|JH947177.1| Elephantulus edwardii unplaced genomic scaffold scaffold00048, whole genome shotgun sequence Length = 18110590 Score = 49.7 bits (117), Expect = 7e-04 Identities = 27/88 (30%), Positives = 43/88 (48%) Frame = -2 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PTR P + + + I G GTV G + +G + G V + + +VKS++M H Sbjct: 7169634 PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNITTEVKSVEMHHE 7169455 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K + RG V Sbjct: 7169454 ALSEALPGDNVGFNVKNVSVKDVRRGNV 7169371 >gi|408541735|gb|JH947197.1| Elephantulus edwardii unplaced genomic scaffold scaffold00068, whole genome shotgun sequence Length = 16183629 Score = 49.3 bits (116), Expect = 0.001 Identities = 27/88 (30%), Positives = 43/88 (48%) Frame = -1 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P + + + I G GTV G + +G + G V + V +VKS++M H Sbjct: 2310096 PTLPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHE 2309917 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K + RG+V Sbjct: 2309916 ALSEALPGDNVGFNVKNVSVKDVRRGIV 2309833 >gi|408541800|gb|JH947132.1| Elephantulus edwardii unplaced genomic scaffold scaffold00003, whole genome shotgun sequence Length = 43889205 Score = 48.5 bits (114), Expect = 0.002 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 6/89 (6%) Frame = +3 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLN 146 ++ ++D PGH G+ + D+ +LV+D+ G++ Q+ E + + + +V LN Sbjct: 42966078 EMLIIDTPGHEYFSNLRNRGSSLCDIAILVVDIMHGLEPQTTESINLLNLKKCPFIVALN 42966257 Query: 147 KIDLLPEGKRQ------AAIDKMTKKMQK 169 KID L + K+ ++K KK+QK Sbjct: 42966258 KIDRLYDWKKSTDSDVAVTLEKQEKKLQK 42966344 Score = 40.8 bits (94), Expect = 0.33 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+D+ F VT++D PGH Sbjct: 35866785 DKLKAERERGITIDISLWKFETS-------------------------KYYVTIIDAPGH 35866889 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 IR +I G D +L++ ++K QT+ L+ + ++L+V +NK Sbjct: 35866890 RDFIRNMITGTSQADCAVLIVAAGVGEFEAGISKHGQTRE-HALLAYTLGVKQLIVGVNK 35867066 Query: 148 IDLLPEGKRQAAIDKMTKKM 167 +D + Q +++ K++ Sbjct: 35867067 MDSIEPPYSQKRYEEIVKEV 35867126 Score = 40.4 bits (93), Expect = 0.44 Identities = 21/81 (25%), Positives = 39/81 (48%) Frame = -1 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P + + + I G GTV G + +G + V + + +VKS++M+H Sbjct: 37627941 PTCPTDKPLCLLLQDVYKIGGIGTVPVGRVETGVLKPVMVVTFAPVNITTEVKSVEMYHE 37627762 Query: 276 PITSAMQGDRLGICVTQFDPK 296 ++ A+ G +G+ V + K Sbjct: 37627761 ALSEALPGSNVGLNVKKISVK 37627699 >gi|408541802|gb|JH947130.1| Elephantulus edwardii unplaced genomic scaffold scaffold00001, whole genome shotgun sequence Length = 49259779 Score = 48.1 bits (113), Expect = 0.002 Identities = 27/88 (30%), Positives = 43/88 (48%) Frame = -3 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P + + + I G GTV G + +G + G V + V +VKS++M H Sbjct: 28635644 PTHPTDRPLHLPLRDVYKIGGIGTVPVGIVETGVLKPGIVVTFAPVNVTTEVKSVEMHHG 28635465 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 P++ A+ GD +G + K + RG V Sbjct: 28635464 PLSEALPGDNVGFNIKNISVKDV*RGNV 28635381 >gi|408541610|gb|JH947322.1| Elephantulus edwardii unplaced genomic scaffold scaffold00193, whole genome shotgun sequence Length = 5764829 Score = 47.4 bits (111), Expect = 0.004 Identities = 28/88 (31%), Positives = 43/88 (48%) Frame = -1 Query: 217 TRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMP 276 TR P P + C + G GTV G + +G + G V + + +VKS++M H Sbjct: 5129171 TRSPLPPHAGAPHTCSGL-GIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEA 5128995 Query: 277 ITSAMQGDRLGICVTQFDPKLLERGLVC 304 ++ A+ GD +G V K + RG VC Sbjct: 5128994 LSEALPGDNVGFNVKNVSVKDIRRGNVC 5128911 >gi|408541753|gb|JH947179.1| Elephantulus edwardii unplaced genomic scaffold scaffold00050, whole genome shotgun sequence Length = 19044096 Score = 47.4 bits (111), Expect = 0.004 Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 25/241 (10%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 V ++D PGH ++ +I G D +L++ DV+K QT+ L + Q+ Sbjct: 13176710 VAIIDAPGHRDFLKNMITGTSQADCTILIVAAGVGEIEADVSKNRQTREHALLGVKQL-- 13176883 Query: 139 QKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXX 196 ++NK+D Q +++ K++ ++ + + +P+ Sbjct: 13176884 -----IVNKMDSTEPRYSQNGDEEIIKEVSIYIKKIGYNPDTVAFVPISAWNGDNMLEPS 13177048 Query: 197 XXXXXIP--------------ELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMT 242 L+E L I PT P + + F I G+ V T Sbjct: 13177049 ANMPWFKGWKVTRKDGSASGTTLLEALDC-ILPPTHPTDKPLCLPLQDVFKILGK--VET 13177219 Query: 243 GTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGL 302 G + G + V + V +VKS+++ H ++ A+ GD +G + K ++RG Sbjct: 13177220 GVLKPGMV-----VTFAPVTVTTEVKSIEIHHEALSEALPGDSIGFNIKNVSVKDVQRGR 13177384 Query: 303 V 303 V Sbjct: 13177385 V 13177387 >gi|408541510|gb|JH947422.1| Elephantulus edwardii unplaced genomic scaffold scaffold00293, whole genome shotgun sequence Length = 3157096 Score = 46.6 bits (109), Expect = 0.006 Identities = 26/86 (30%), Positives = 41/86 (47%) Frame = -3 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PTR P + + + I G GTV G + +G + G V ++ V +VKS +M H Sbjct: 1892324 PTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFSSVNVTTEVKSAEMHHE 1892145 Query: 276 PITSAMQGDRLGICVTQFDPKLLERG 301 ++ + GD +G V K + RG Sbjct: 1892144 ALSEGLPGDNVGFNVKNVSVKDV*RG 1892067 >gi|408541562|gb|JH947370.1| Elephantulus edwardii unplaced genomic scaffold scaffold00241, whole genome shotgun sequence Length = 4294721 Score = 46.6 bits (109), Expect = 0.006 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 17/249 (6%) Frame = +3 Query: 89 TLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-MQT------QSAECLVIGQIACQK- 140 T++D PGH S + +IGGA DL +LVI KG +T Q+ E ++ + A K Sbjct: 3428070 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKH 3428249 Query: 141 LVVVLNKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPVXXXXXXXXXXXXXXXX 200 L+V++NK+D ++ +K+ L+ F I Sbjct: 3428250 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 3428429 Query: 201 XIP--ELIELLTSQISIP--TRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSV 256 P + + ++P R GP + + + K GTV+ G + SGSI G + Sbjct: 3428430 FCPWYSGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY--KDMGTVVLGKLESGSICKGQQL 3428603 Query: 257 EIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQF-DPKLLERGLVCAPESL----HT 311 + K +V + + S G+ L I + + ++L ++C P +L T Sbjct: 3428604 VMMPNKHNVEVLGILSDDVETDSVAPGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRT 3428783 Query: 312 VHAALISVE 320 A ++ +E Sbjct: 3428784 FDAQIVIIE 3428810 >gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genomic scaffold scaffold00002, whole genome shotgun sequence Length = 47609318 Score = 45.8 bits (107), Expect = 0.010 Identities = 24/86 (27%), Positives = 40/86 (46%) Frame = +1 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P + + + I G GTV G + +G + G V + +VKS++M H Sbjct: 28060786 PTHPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNAASEVKSVEMHHD 28060965 Query: 276 PITSAMQGDRLGICVTQFDPKLLERG 301 ++ A+ GD +G + K + RG Sbjct: 28060966 TLSEALPGDNVGFDIKNVSVKDVRRG 28061043 Score = 40.8 bits (94), Expect = 0.33 Identities = 28/96 (29%), Positives = 47/96 (48%) Frame = +1 Query: 205 LIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVV 264 L+E L + I PTR P + + + I G GTV G + +G + G V + V Sbjct: 9518299 LLEAL-NYILPPTRPTGKPLRLPLQDVYKIGGIGTVPVGRMETGVLKPGMVVTFAPVNVT 9518475 Query: 265 KKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLER 300 ++K ++M H ++ A+ G+ C Q+ +L ER Sbjct: 9518476 TEIKFVEMHHEALSEALPGNNQ--CWFQY*ERLCER 9518577 >gi|408541478|gb|JH947454.1| Elephantulus edwardii unplaced genomic scaffold scaffold00325, whole genome shotgun sequence Length = 2457883 Score = 45.4 bits (106), Expect = 0.014 Identities = 26/88 (29%), Positives = 41/88 (46%) Frame = -1 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P + + + I G GTV G + + + G V + V +VKS++M H Sbjct: 1930339 PTHPTDKPLRLPLQDVYKIGGIGTVPVGRVETDVLKPGMVVTFAPVNVTTEVKSVEMHHE 1930160 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K + RG V Sbjct: 1930159 ALSEALPGDNVGFNVKNVSVKDVRRGNV 1930076 >gi|408541752|gb|JH947180.1| Elephantulus edwardii unplaced genomic scaffold scaffold00051, whole genome shotgun sequence Length = 18525102 Score = 45.4 bits (106), Expect = 0.014 Identities = 26/87 (29%), Positives = 41/87 (47%) Frame = +2 Query: 217 TRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMP 276 TR P + + + I G GTV G + +G + G V + V +VKS++M H Sbjct: 44162 TRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEA 44341 Query: 277 ITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K + G V Sbjct: 44342 LSDALPGDNVGFNVKNVSVKDVRHGNV 44422 >gi|408541237|gb|JH947695.1| Elephantulus edwardii unplaced genomic scaffold scaffold00566, whole genome shotgun sequence Length = 277993 Score = 43.1 bits (100), Expect = 0.067 Identities = 26/88 (29%), Positives = 40/88 (45%) Frame = +3 Query: 216 PTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHM 275 PT P +S+ + I G GTV G + + + G V + V +VKS +M H Sbjct: 18183 PTHPTDKPLRLSLQGVYKIGGIGTVSVGRVETVILKPGMVVTFAPVNVTTEVKSFEMHHE 18362 Query: 276 PITSAMQGDRLGICVTQFDPKLLERGLV 303 ++ A+ GD +G V K + G V Sbjct: 18363 ALSEALPGDNVGFNVKNVSVKDVRCGNV 18446 >gi|408541243|gb|JH947689.1| Elephantulus edwardii unplaced genomic scaffold scaffold00560, whole genome shotgun sequence Length = 321695 Score = 42.7 bits (99), Expect = 0.088 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -3 Query: 90 LVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKID 149 ++D PGH S G+ + D+ +LV+D+ G++ Q+ E + + + +V LNKID Sbjct: 196044 IIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKID 195865 Query: 150 LLPEGK 155 L + K Sbjct: 195864 RLYDWK 195847 >gi|408541338|gb|JH947594.1| Elephantulus edwardii unplaced genomic scaffold scaffold00465, whole genome shotgun sequence Length = 824570 Score = 42.4 bits (98), Expect = 0.12 Identities = 24/71 (33%), Positives = 37/71 (52%) Frame = +2 Query: 233 SIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQGDRLGICVTQ 292 +I G GTV G + +G + G V + V +VKS++M H ++ A+ GD +G V Sbjct: 280166 TILGIGTVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKN 280345 Query: 293 FDPKLLERGLV 303 K + RG V Sbjct: 280346 VSVKDVRRGNV 280378 >gi|408541530|gb|JH947402.1| Elephantulus edwardii unplaced genomic scaffold scaffold00273, whole genome shotgun sequence Length = 3493097 Score = 42.4 bits (98), Expect = 0.12 Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -1 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKG-MQTQSAECLVIGQIACQKLVVVLN 146 VT++D PGH I+T+I G + D +L+I + G ++ +I + ++L+V +N Sbjct: 2737673 VTIIDAPGHKDFIKTMIAGTSLADCAVLIIAASVGDLRLNCEHAPLIYTLVVKQLIVDVN 2737494 Query: 147 KID 149 K+D Sbjct: 2737493 KMD 2737485 >gi|408541470|gb|JH947462.1| Elephantulus edwardii unplaced genomic scaffold scaffold00333, whole genome shotgun sequence Length = 2379263 Score = 41.6 bits (96), Expect = 0.20 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = +3 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGM-QTQSAECLVIGQIACQKLVVVL- 145 V+ +DCPGH L+ ++ GA ++D +L+I + Q Q++E L I K V++L Sbjct: 5802 VSFIDCPGHNILMTPMLNGAAVMDTALLLIAGNESCPQPQTSEHLTAI*IMKLKHVLILQ 5981 Query: 146 NKIDLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPIIPV 184 NKIDL+ + + +++ + T+ +GA IP+ Sbjct: 5982 NKIDLVK*SQAKEQYEQILAFVHGTVA----KGASTIPI 6086 >gi|408541711|gb|JH947221.1| Elephantulus edwardii unplaced genomic scaffold scaffold00092, whole genome shotgun sequence Length = 13624840 Score = 40.8 bits (94), Expect = 0.33 Identities = 23/79 (29%), Positives = 37/79 (46%) Frame = +2 Query: 223 PFLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVKSMQMFHMPITSAMQ 282 P + + + I G GTV G + G + G V + V +VKS++M H ++ A+ Sbjct: 12954779 PLRLPLQDVYKIGGIGTVPVGRVEIGVLEPGMVVTFAPVNVTTEVKSVEMHHEALSEALP 12954958 Query: 283 GDRLGICVTQFDPKLLERG 301 D +G V K + RG Sbjct: 12954959 DDNVGFNVKNVSVKDVRRG 12955015 >gi|408541763|gb|JH947169.1| Elephantulus edwardii unplaced genomic scaffold scaffold00040, whole genome shotgun sequence Length = 21071559 Score = 38.1 bits (87), Expect = 2.2 Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 9/149 (6%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RE GIT+D+ F VT++D PGH Sbjct: 16741069 DKLKAEREHGITIDISLWKFETS-------------------------KYYVTIIDAPGH 16741173 Query: 97 ASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIACQKLVVVLNK 147 I+ +I G D +L + ++K QT L+ + ++L+V +NK Sbjct: 16741174 RDFIKNMITGTSQADCAVLSVAAGVGEFEAGISKNGQTHE-HALLAYTLGVKQLIVGVNK 16741350 Query: 148 IDLLPEGKRQAAIDKMTKKMQKTLENTKF 176 +D Q +++ K+++ ++ T + Sbjct: 16741351 MDSTKPPYSQKRYEEIVKEVKTDIKKTGY 16741437 >gi|408541616|gb|JH947316.1| Elephantulus edwardii unplaced genomic scaffold scaffold00187, whole genome shotgun sequence Length = 6674987 Score = 37.7 bits (86), Expect = 2.8 Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 8/139 (5%) Frame = +1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+++ F VT++D PGH Sbjct: 5526847 DKLKAERERGITIEISLWKFETS-------------------------KFYVTIIDAPGH 5526951 Query: 97 ASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ II G D +L++ + G+ C L+ + ++L+V +NK+ Sbjct: 5526952 RDFIKNIITGTSWADCAVLIVAAGVGEFEAGISKNGQTCEHALLAHTLDVKQLIVGVNKM 5527131 Query: 149 DLLPEGKRQAAIDKMTKKM 167 D Q +++ K++ Sbjct: 5527132 DSTEPPYSQKRYEEIVKEV 5527188 >gi|408541744|gb|JH947188.1| Elephantulus edwardii unplaced genomic scaffold scaffold00059, whole genome shotgun sequence Length = 18149246 Score = 37.7 bits (86), Expect = 2.8 Identities = 49/256 (19%), Positives = 88/256 (34%), Gaps = 24/256 (9%) Frame = -1 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RE GIT+D+ F VT++D PGH Sbjct: 964220 DKLKAEREHGITIDISLWKFETS-------------------------KYYVTIIDAPGH 964116 Query: 97 ASLIRTIIGGAQIIDLMMLVI-----DVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ +I G D +L++ + G+ C L+ ++ ++L+V +NK+ Sbjct: 964115 RDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTCEHALLAYTLSVKQLIVGVNKM 963936 Query: 149 DLLPEGKRQAAIDKMTKKMQKTLENTKFRGAPI--IPVXXXXXXXXXXXXXXXXXI---- 202 D Q +++ K++ ++ + + +P+ Sbjct: 963935 DSTKPPYSQKRYEEIVKEVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWK 963756 Query: 203 ----------PELIELLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL 252 L+E L I PTR P + + + I G GTV + +G + L Sbjct: 963755 VTRKDGSDSGTTLLEALDC-ILPPTRPIDKPLRLPLQDVYKIGGIGTVPVARVETGVLKL 963579 Query: 253 GDSVEIPALKVVKKVK 268 +P + K K Sbjct: 963578 AWWSHLPQSTLPLKYK 963531 >gi|408541576|gb|JH947356.1| Elephantulus edwardii unplaced genomic scaffold scaffold00227, whole genome shotgun sequence Length = 4823725 Score = 37.4 bits (85), Expect = 3.7 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 8/121 (6%) Frame = +3 Query: 37 DKQPQSRERGITLDLGFSCFSVPLPARLRSSXXXXXXXXXXXXXXXXXXXQVTLVDCPGH 96 DK RERGIT+++ F VT++D PGH Sbjct: 4164240 DKLKAERERGITINISLWKFETS-------------------------KYYVTIIDAPGH 4164344 Query: 97 ASLIRTIIGGAQIIDLMML-----VIDVTKGMQTQSAEC---LVIGQIACQKLVVVLNKI 148 I+ II G D +L V++ G+ C L+ + ++L+V +NK+ Sbjct: 4164345 RDFIKNIITGTTQADCAVLIVAAGVVEFEAGISKNGQTCEYALLAYTLGVKQLIVCVNKM 4164524 Query: 149 D 149 D Sbjct: 4164525 D 4164527 >gi|408541792|gb|JH947140.1| Elephantulus edwardii unplaced genomic scaffold scaffold00011, whole genome shotgun sequence Length = 32252908 Score = 37.0 bits (84), Expect = 4.8 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = -1 Query: 87 QVTLVDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQIA 137 ++T +D PGHA+ GAQ+ D+++LV+ G+ Q+ E + Q A Sbjct: 13672546 KITFLDTPGHAAFSAMRARGAQVTDIVILVVAADDGVMKQTVESIQHAQDA 13672394 >gi|408541634|gb|JH947298.1| Elephantulus edwardii unplaced genomic scaffold scaffold00169, whole genome shotgun sequence Length = 7559916 Score = 36.6 bits (83), Expect = 6.3 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 9/71 (12%) Frame = +2 Query: 88 VTLVDCPGHASLIRTIIGGAQIIDLMMLVI---------DVTKGMQTQSAECLVIGQIAC 138 VT++D PGH +I+ II G D +L++ ++K QTQ L+ + Sbjct: 4195634 VTIIDAPGHKDIIKNIIIGTSQADWAVLIVAAGVGEFKAGISKNGQTQE-HALLAYTLGV 4195810 Query: 139 QKLVVVLNKID 149 ++L+V +N++D Sbjct: 4195811 KQLIVGVNRMD 4195843 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 3,699,102,358 Number of sequences in database: 427 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa.01 Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 144,880,503 Number of sequences in database: 8341 Lambda K H 0.321 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,274,830,768 Number of Sequences: 8768 Number of extensions: 31674873 Number of successful extensions: 110231 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 220 Number of HSP's successfully gapped in prelim test: 103 Number of HSP's that attempted gapping in prelim test: 95228 Number of HSP's gapped (non-prelim): 45777 length of query: 596 length of database: 1,281,327,620 effective HSP length: 140 effective length of query: 456 effective length of database: 1,280,100,100 effective search space: 583725645600 effective search space used: 583725645600 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 81 (35.8 bits)