TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00001545_2.0 # Protein # Iodothyronine deiodinase 3 (DI3) # Mouse (Mus musculus) (275 letters) Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome .fa 8768 sequences; 3,843,982,861 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genom... 496 e-139 gi|408541766|gb|JH947166.1| Elephantulus edwardii unplaced genom... 136 2e-30 gi|408541798|gb|JH947134.1| Elephantulus edwardii unplaced genom... 74 1e-11 gi|408541781|gb|JH947151.1| Elephantulus edwardii unplaced genom... 37 1.2 gi|408541775|gb|JH947157.1| Elephantulus edwardii unplaced genom... 36 3.4 >gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genomic scaffold scaffold00002, whole genome shotgun sequence Length = 47609318 Score = 496 bits (1278), Expect = e-139 Identities = 238/263 (90%), Positives = 248/263 (94%) Frame = +3 Query: 13 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLRRRHPDHPEPEVELNSEGEEMPPDDP 72 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFL RR PEPEVELNSEGEE+ PDDP Sbjct: 35367474 CAQTASCLVLFPRFLGTAFMLWLLDFLCIRKHFLGRRRRGQPEPEVELNSEGEEVLPDDP 35367653 Query: 73 PICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVRPDGFQSQRILDYAQGT 132 PICVSDDNRLCTLASL+AVWHGQKLDFFKQAHEGGPAPNSEVV PDGFQSQ ILDYA+G Sbjct: 35367654 PICVSDDNRLCTLASLRAVWHGQKLDFFKQAHEGGPAPNSEVVLPDGFQSQHILDYARGN 35367833 Query: 133 RPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGWVTTDSPYVIPQ 192 RPLVLNFGSCT PPFMARMSAF+RLV KYQRDVDFLIIYIEEAHPSDGWVTTDSPY IPQ Sbjct: 35367834 RPLVLNFGSCT*PPFMARMSAFRRLVNKYQRDVDFLIIYIEEAHPSDGWVTTDSPYSIPQ 35368013 Query: 193 HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQSGTIMYQGGRGPD 252 HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQ+GTI++QGGRGPD Sbjct: 35368014 HRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLYVIQNGTIVFQGGRGPD 35368193 Query: 253 GYQVSELRTWLERYDEQLHGTRP 275 GYQV+ELRTWLE Y++QLH T P Sbjct: 35368194 GYQVAELRTWLEHYNDQLHSTHP 35368262 >gi|408541766|gb|JH947166.1| Elephantulus edwardii unplaced genomic scaffold scaffold00037, whole genome shotgun sequence Length = 21211568 Score = 136 bits (342), Expect = 2e-30 Identities = 80/204 (39%), Positives = 117/204 (57%), Gaps = 6/204 (2%) Frame = +3 Query: 68 PPDDPPICVSDDNRLCTLASLKAVWHGQKLDFFKQAHEGGPAPNSEVVRPDGFQSQRILD 127 PP P + + +D A +V H K + G P ++ DG + +LD Sbjct: 3181737 PPHPPQVKLGED------APNSSVVHVSKSEV-----GGHSGPGAQEKTADGAECH-LLD 3181880 Query: 128 YAQGTRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPSDGW-VTTDS 186 +A RPLV+NFGS T PPF +++ AF +LV ++ DFL++YI+EAHPSDGW V DS Sbjct: 3181881 FATPERPLVVNFGSAT*PPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDS 3182060 Query: 187 --PYVIPQHRSLEDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQSG 241 + + +HR+ EDR +AA L + P C +V D M N+++ AYG FER+ ++Q Sbjct: 3182061 SLSFEVKKHRNQEDRCAAAHKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQ 3182240 Query: 242 TIMYQGGRGPDGYQVSELRTWLER 265 I Y GG+GP Y + E+R WLE+ Sbjct: 3182241 KIAYLGGKGPFYYNLQEVRRWLEK 3182312 >gi|408541798|gb|JH947134.1| Elephantulus edwardii unplaced genomic scaffold scaffold00005, whole genome shotgun sequence Length = 38686854 Score = 73.6 bits (179), Expect = 1e-11 Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 14/102 (13%) Frame = +2 Query: 177 PSDGWVTTDSPYVIPQHRSLEDRVSAARVLQQGAPGCALVLDTMANSSSSAYGAYFERLY 236 P DGW ++ VI HR+L+DR+ AAR+L + +P C +V+DTM N SS Y A ERLY Sbjct: 10344083 PVDGWAFKNN-VVIRNHRNLQDRLRAARLLLERSPQCPVVVDTMQNVSSQRYAALPERLY 10344259 Query: 237 VIQSGTIMY---------QGGRGPDGYQVSELR-----TWLE 264 V+Q G I+Y +G +G G QV R TW++ Sbjct: 10344260 VLQEGRILYKVVTGNRRPRGAKGAQGGQVHTERALPRQTWIQ 10344385 Score = 65.1 bits (157), Expect = 5e-09 Identities = 29/48 (60%), Positives = 35/48 (72%) Frame = +2 Query: 131 GTRPLVLNFGSCTXPPFMARMSAFQRLVTKYQRDVDFLIIYIEEAHPS 178 G RPLVLNFGSCT P F+ + F+RL+ + DFLIIYIEEAHP+ Sbjct: 10336067 GVRPLVLNFGSCT*PSFLLKFDRFKRLIEDFSSVADFLIIYIEEAHPA 10336210 >gi|408541781|gb|JH947151.1| Elephantulus edwardii unplaced genomic scaffold scaffold00022, whole genome shotgun sequence Length = 26541223 Score = 37.4 bits (85), Expect = 1.2 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Frame = +3 Query: 13 CAQTASCLVLFPRFLGTAFMLWL-----LDFLCIRKHFLRRRHPDHPEPEVELNSEGEEM 67 C+ VL+ FL +F++W + +L I+K L+ P PE E++S + M Sbjct: 19094328 CSAVVGVCVLY--FLSNSFLMWAAVSFSMLYLSIQKQGLQ---PKFQIPETEISSLAKRM 19094492 Query: 68 PPDDPPICVSDDNRLCT 84 PP P CV LCT Sbjct: 19094493 PPSLNPCCVLYRTFLCT 19094543 >gi|408541775|gb|JH947157.1| Elephantulus edwardii unplaced genomic scaffold scaffold00028, whole genome shotgun sequence Length = 22341012 Score = 35.8 bits (81), Expect = 3.4 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 12/86 (13%) Frame = -3 Query: 18 SCLVLFPRFLGTA------FMLWLLD-FLCIRKHFLRRRHPDHPEPEVELNSEGEEMPPD 70 SCL L P LG F+L ++D + ++K RH H + +L+ PP Sbjct: 8575366 SCLGLCPGTLGRGKAPRSFFLLGIVDGHVVVKKDKQEERHAQHVGEDGKLHVRDHPDPPG 8575187 Query: 71 DPPICVSD-----DNRLCTLASLKAV 91 PP+ + D+++CT + L A+ Sbjct: 8575186 SPPMLTASKFQAGDSQICTFSKLPAI 8575109 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 3,699,102,358 Number of sequences in database: 427 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa.01 Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 144,880,503 Number of sequences in database: 8341 Lambda K H 0.322 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,424,747,536 Number of Sequences: 8768 Number of extensions: 25333430 Number of successful extensions: 122927 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 322 Number of HSP's successfully gapped in prelim test: 306 Number of HSP's that attempted gapping in prelim test: 91738 Number of HSP's gapped (non-prelim): 72229 length of query: 275 length of database: 1,281,327,620 effective HSP length: 131 effective length of query: 144 effective length of database: 1,280,179,012 effective search space: 184345777728 effective search space used: 184345777728 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 77 (34.3 bits)