TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|6753638|ref|NP_034180.1| type II iodothyronine deiodinase [Mus musculus] (266 letters) Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome .fa 8768 sequences; 3,843,982,861 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|408541766|gb|JH947166.1| Elephantulus edwardii unplaced genom... 343 9e-93 gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genom... 157 7e-37 gi|408541798|gb|JH947134.1| Elephantulus edwardii unplaced genom... 65 6e-09 gi|408541788|gb|JH947144.1| Elephantulus edwardii unplaced genom... 37 1.4 >gi|408541766|gb|JH947166.1| Elephantulus edwardii unplaced genomic scaffold scaffold00037, whole genome shotgun sequence Length = 21211568 Score = 343 bits (879), Expect = 9e-93 Identities = 173/196 (88%), Positives = 179/196 (91%), Gaps = 3/196 (1%) Frame = +3 Query: 74 QVKLGEDAPNSSVVHVSNPESGNNY---ASEKTADGAECHLLDFASAERPLVVNFGSATX 130 QVKLGEDAPNSSVVHVS E G + A EKTADGAECHLLDFA+ ERPLVVNFGSAT Sbjct: 3181752 QVKLGEDAPNSSVVHVSKSEVGGHSGPGAQEKTADGAECHLLDFATPERPLVVNFGSAT* 3181931 Query: 131 PPFTRQLPAFRQLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCA 190 PPFT QLPAF +LVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCA Sbjct: 3181932 PPFTSQLPAFSKLVEEFSSVADFLLVYIDEAHPSDGWAVPGDSSLSFEVKKHRNQEDRCA 3182111 Query: 191 AAHQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQRRKIAYLGGKGPFSYNLQE 250 AAH+LLERFSLPPQC+VVADRMDNNANVAYGVAFERVCIVQR+KIAYLGGKGPF YNLQE Sbjct: 3182112 AAHKLLERFSLPPQCRVVADRMDNNANVAYGVAFERVCIVQRQKIAYLGGKGPFYYNLQE 3182291 Query: 251 VRSWLEKNFSKRXILD 266 VR WLEKNFSKR LD Sbjct: 3182292 VRRWLEKNFSKR*NLD 3182339 Score = 147 bits (370), Expect = 1e-33 Identities = 73/77 (94%), Positives = 74/77 (96%) Frame = +1 Query: 1 MGLLSVDLLITLQILPVFFSNCLFLALYDSVILLKHVALLLSRSKSTRGEWRRMLTSEGL 60 MG+LSVDLLITLQILPVFFSNCLFLALYDSVILLKHV LLLSRSKSTRGEWRRMLTSEGL Sbjct: 3171175 MGILSVDLLITLQILPVFFSNCLFLALYDSVILLKHVVLLLSRSKSTRGEWRRMLTSEGL 3171354 Query: 61 RCVWNSFLLDAYKQVKL 77 RCVW SFLLDAYKQV L Sbjct: 3171355 RCVWKSFLLDAYKQVSL 3171405 >gi|408541801|gb|JH947131.1| Elephantulus edwardii unplaced genomic scaffold scaffold00002, whole genome shotgun sequence Length = 47609318 Score = 157 bits (397), Expect = 7e-37 Identities = 88/205 (42%), Positives = 121/205 (59%), Gaps = 1/205 (0%) Frame = +3 Query: 53 RMLTSEGLRCVWNSFLLDAYKQVKLGEDAPNSSVVHVSNPESGNNYASEKTADGAEC-HL 111 R+ T LR VW+ LD +KQ G APNS VV DG + H+ Sbjct: 35367678 RLCTLASLRAVWHGQKLDFFKQAHEGGPAPNSEVV---------------LPDGFQSQHI 35367812 Query: 112 LDFASAERPLVVNFGSATXPPFTRQLPAFRQLVEEFSSVADFLLVYIDEAHPSDGWAVPG 171 LD+A RPLV+NFGS T PPF ++ AFR+LV ++ DFL++YI+EAHPSDGW V Sbjct: 35367813 LDYARGNRPLVLNFGSCT*PPFMARMSAFRRLVNKYQRDVDFLIIYIEEAHPSDGW-VTT 35367989 Query: 172 DSSLSFEVKKHRNQEDRCAAAHQLLERFSLPPQCQVVADRMDNNANVAYGVAFERVCIVQ 231 DS + + +HR+ EDR +AA L + P C +V D M N+++ AYG FER+ ++Q Sbjct: 35367990 DS--PYSIPQHRSLEDRVSAARVLQQG---APGCALVLDTMANSSSSAYGAYFERLYVIQ 35368154 Query: 232 RRKIAYLGGKGPFSYNLQEVRSWLE 256 I + GG+GP Y + E+R+WLE Sbjct: 35368155 NGTIVFQGGRGPDGYQVAELRTWLE 35368229 >gi|408541798|gb|JH947134.1| Elephantulus edwardii unplaced genomic scaffold scaffold00005, whole genome shotgun sequence Length = 38686854 Score = 64.7 bits (156), Expect = 6e-09 Identities = 28/46 (60%), Positives = 38/46 (82%) Frame = +2 Query: 119 RPLVVNFGSATXPPFTRQLPAFRQLVEEFSSVADFLLVYIDEAHPS 164 RPLV+NFGS T P F + F++L+E+FSSVADFL++YI+EAHP+ Sbjct: 10336073 RPLVLNFGSCT*PSFLLKFDRFKRLIEDFSSVADFLIIYIEEAHPA 10336210 Score = 52.8 bits (125), Expect = 3e-05 Identities = 30/75 (40%), Positives = 40/75 (53%) Frame = +2 Query: 163 PSDGWAVPGDSSLSFEVKKHRNQEDRCAAAHQLLERFSLPPQCQVVADRMDNNANVAYGV 222 P DGWA + ++ HRN +DR AA LLER PQC VV D M N ++ Y Sbjct: 10344083 PVDGWAFKNN----VVIRNHRNLQDRLRAARLLLER---SPQCPVVVDTMQNVSSQRYAA 10344241 Query: 223 AFERVCIVQRRKIAY 237 ER+ ++Q +I Y Sbjct: 10344242 LPERLYVLQEGRILY 10344286 >gi|408541788|gb|JH947144.1| Elephantulus edwardii unplaced genomic scaffold scaffold00015, whole genome shotgun sequence Length = 29796289 Score = 37.0 bits (84), Expect = 1.4 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 13/109 (11%) Frame = +1 Query: 7 DLLITLQILPVFFSNCLFLALYDSVILLKHVALLLSRSKSTRGEWRRML---TSEGLRC- 62 D++ I +FF + + L+KH+ ++L+ S WR L T+ G C Sbjct: 27824644 DMIEFCVISEIFFKKPITGVNEEGPYLMKHIEIVLTTSMDRDD*WRNSLPVQTTSGADCG 27824823 Query: 63 ------VWNSFLLDAYKQVKLGEDA---PNSSVVHVSNPESGNNYASEK 102 +WNS L + ++KL S +H+ PE NYASEK Sbjct: 27824824 IDHLLLIWNSDLKKEFLKLKLKMKTSLQSQSMTLHLIPPEF-KNYASEK 27824967 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 3,699,102,358 Number of sequences in database: 427 Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno me.fa.01 Posted date: Oct 18, 2013 6:06 PM Number of letters in database: 144,880,503 Number of sequences in database: 8341 Lambda K H 0.321 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,286,530,499 Number of Sequences: 8768 Number of extensions: 19062385 Number of successful extensions: 79151 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 299 Number of HSP's successfully gapped in prelim test: 245 Number of HSP's that attempted gapping in prelim test: 62152 Number of HSP's gapped (non-prelim): 44123 length of query: 266 length of database: 1,281,327,620 effective HSP length: 131 effective length of query: 135 effective length of database: 1,280,179,012 effective search space: 172824166620 effective search space used: 172824166620 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 77 (34.3 bits)