genewise output Score 1006.08 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000079_1.0 1 MPVDDCWLYFPASRGRTFVQTVWVAPTCPNCCWFPGFLPPVPRPPHVPR MP+D+ WL +PA FV TV V CP+C FP P V PP+V MPIDEYWLCLPACPASPFVHTVRVM-RCPHCGCFPSVHPSVLEPPYVAT gi|408541735|gb93200 acaggttctccgtcgactgcagaga ctcctgttcagcctgcgcctgga tctaaagtgtccgccgcttactgtt ggcagggtcgtaccttaccatcc gattgcggtgaccctcttcctcggg atcctcctatcctactaatcgcc SPP00000079_1.0 50 VLLRGPRGAVLPASRPSKTLPSSSQTP--CPTDPCICPPPSTPDSRQEK +L R AVLP+ S PS+S+ P DP +C PS PD RQ++ MLPRSSHSAVLPSPSSSTEPPSTSRAPPASAADPKLCLSPSPPDHRQQR gi|408541735|gb93344 accaaacaggcctctttagcctatcgccgtgggcactctctccgcacca ttcgggagcttcccccccacccccgcccccccacatgtcccccaagaag gggaccctggtttatcccactcacaattttttccgcccactatctgggg SPP00000079_1.0 97 NTQSEL PNKKGQLQKLPTMNGSKDPP N S + +KG L K MNGS++ P NVHSGM VYQKGTLHKPSRMNGSENLP gi|408541735|gb93491 agctgaGTAAGTG Intron 1 TAGgtcagaccactaaagtgacc atacgt<0-----[93509:94547]-0>taaagctaaccgtagcaatc tgttgg ttgggatcgaaagtctgctg SPP00000079_1.0 123 GSYDFDLIIIGGGSGGLAAAKARLSA SYD+DLIIIGGGSGGLAAAKARL ESYDYDLIIIGGGSGGLAAAKARL-C A:P[ccc] gi|408541735|gb94608 gttgtgcaaagggtggcgggagac tCGTGTTGT Intron 2 acaaaattttgggcggtcccacgt g <1-----[94684:98962] gctctctcccatctaggaatgagc t SPP00000079_1.0 149 KFDKKVLVLDFVTPTPLGTRW K+DKKV+VLDFVTPTPLGTRW KYDKKVMVLDFVTPTPLGTRW G:G[ggt] gi|408541735|gb98960 CAGCCatgaagagcgtgacaccgaatGGTAAGCT Intron 3 -1> aaaaattttattcccctgcgg <1-----[99029:100000] gtcggggcgttccgcttatag SPP00000079_1.0 171 LGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKVEDT LGGTCVNVGCIPKKLMHQAALLGQAL+DSRNYGWKVEDT LGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEDT gi|408541735|gb99998 TAGGTcggatgaggtacaacaccggtcgcgccgtcatgtaggga -1> tggcgtatggtcaattaaccttgactaacgaaggataac caaacgtgccaaggggcgatggaaccgctcctggacgca SPP00000079_1.0 211 KHDWEKMTESVQSHIGSLNWGYR +HDW+KMTE+VQ+HIGSLNWGYR V:V[gtt] QHDWDKMTEAVQNHIGSLNWGYR gi|408541735|g100120 GGTATGAG Intron 4 CAGTTccgtgaaagggcacagtcatgtc <1-----[100121:10844-1> aaagaatcactaaatgctaggag gccgcagaataatcccggcgccg SPP00000079_1.0 235 VALREKKVVYENAYGRFIGPHRIV AT VALREKKV YENAYG+F+GPH+I AT VALREKKVTYENAYGQFVGPHKIK AT gi|408541735|g108514 ggccgaagatgagtgctggccaaaGTGAGTA Intron 5 CAGga tctgaaatcaaacagattgcaata<0-----[108586:10936-0>cc atgggaacccgtttggtcgctgtg ac SPP00000079_1.0 261 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS NNKGKEKIY+AERFLIATGERPRYLGIPGD+EYCIS NNKGKEKIYTAERFLIATGERPRYLGIPGDREYCIS gi|408541735|g109369 aaagagaataggctcagaggaccttgacggagttaa aaagaaataccagtttccgagcgatgtcgagaagtg ttagaaatcaaggtctgttagaccgactccagcccc SPP00000079_1.0 297 DDLFSLPYCPGKTLVVGASYVAL DDLFSLPY PGKTLVVGASYVAL S:S[agt] DDLFSLPYSPGKTLVVGASYVAL gi|408541735|g109477 AGGTAAGGC Intron 6 CAGTggctttcttcgaacggggttggt <2-----[109479:11105-2> aattctcaccgactttgccatct tctccggccgggcggtacctttg SPP00000079_1.0 321 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHG+KFIRQFV ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGVKFIRQFV gi|408541735|g111124 gtggtcggagtggagagctaccagtgcgagaaaggcaggcggataactg agcgttcgtgtatctttgctttggtaaatcaatgaataaagtattgatt attattacttacctcgggctctaatcgtgccattacggattcgccagta SPP00000079_1.0 370 PTK IEQIEAGTPGRLRVTAQSTNSEE P K +EQIEAGTPGRLRV A+STNSEE PIK VEQIEAGTPGRLRVVAKSTNSEE gi|408541735|g111271 caaGTAAGTG Intron 7 CAGggcagggacgcccgggataaagg cta<0-----[111280:11362-0>taatacgccggtgttcaccagaa aaa taataaacaaacgggcgccttga SPP00000079_1.0 396 TIEGEFNT VLLAVGRDSCTRTIGLET TIEGEFNT VLLA+GRD+CTR IGLET TIEGEFNT VLLAIGRDACTRKIGLET gi|408541735|g113697 aagggtaaGTAAGGA Intron 8 CAGgtcgagaggtaaaagtga ctagatac<0-----[113721:11464-0>tttctggacgcgatgtac ccaagtcg cggataattcagatcagt SPP00000079_1.0 422 VGVKINE TGKIPVTDEEQTNVPY VGVKINE TGKIPVTDEEQTNVPY VGVKINE K:K[aaa] TGKIPVTDEEQTNVPY gi|408541735|g114700 gggaaagAAGTAAGTG Intron 9 CAGAagaacgagggcaagct tgtataa <2-----[114723:11620-2> cgatctcaaaacatca gaggata ggaatctcgggccgtt SPP00000079_1.0 446 IYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSNVK IYAIGDILEGKLELTPVAIQAGRLLAQRLY GS VK IYAIGDILEGKLELTPVAIQAGRLLAQRLYAGSKVK gi|408541735|g116251 atgaggacggacgcacggacggcccgcactggtaga tactgattagatatcctctacggttcagtacgcata ccctcccgaggggccagccgggaggtggtctccacg SPP00000079_1.0 482 CDYDNVPTTVFTPLEYGCCGLSEEKA CDY+NVPTTVFTPLEYG CGLSEEKA CDYENVPTTVFTPLEYGACGLSEEKA gi|408541735|g116359 GTGCGTC Intron 10 CAGtgtgagcaagtactgtggtgctggag <0-----[116359:12450-0>gaaaatcccttcctaagcggtcaaac tctattaatgtatggtactcttagat SPP00000079_1.0 508 VEKFGEENIE VYHSFFWPLEWTVPSR VEKFGEENIE VYHS+FWPLEWT+PSR VEKFGEENIE VYHSYFWPLEWTIPSR gi|408541735|g124583 ggatgggaagGTGAGTT Intron 11 TAGgtcatttctgtaacta taatgaaata<0-----[124613:12704-0>taagatgctagctccg gaatgaattg tcttccgagggctaca SPP00000079_1.0 534 DNNKCYAKIICNLKDD ERVVGFHVLG DNNKCYAKIICN+KD+ ERVVGFH+LG DNNKCYAKIICNIKDN ERVVGFHILG gi|408541735|g127091 gaaattgaaataaagaGTGAGTG Intron 12 TAGgcgggtcacg aaaagacattgataaa<0-----[127139:12810-0>agttgtattg tccattaaaccccact atcgccccgt SPP00000079_1.0 560 PNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTK QLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTKTQLDSTIGIHPVCAE gi|408541735|g128140 caggggacgtgggcatgcaaaccgaaagaccgtgg cacgatcagtccctaggtcacatagctgtactgca attaagagctaggggccgcagggccgcacccccag SPP00000079_1.0 595 IFTTLSVTKRSGGDILQSGC +FTTLSVTKRSGG ILQ+GC VFTTLSVTKRSGGSILQAGC gi|408541735|g128245 GTGAGTG Intron 13 CAGgtaactgaactggaaccggt <0-----[128245:14483-0>ttcctctcagcgggttacgg gcgggggcgccgacccgtcc // Making a P in phase 1 intron Making a G in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron >gi|408541735|gb|JH947197.1|:subseq(15091748,228247).pep MPIDEYWLCLPACPASPFVHTVRVMRCPHCGCFPSVHPSVLEPPYVATMLPRSSHSAVLP SPSSSTEPPSTSRAPPASAADPKLCLSPSPPDHRQQRNVHSGMVYQKGTLHKPSRMNGSE NLPESYDYDLIIIGGGSGGLAAAKARLCPKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVG CIPKKLMHQAALLGQALQDSRNYGWKVEDTVQHDWDKMTEAVQNHIGSLNWGYRVALREK KVTYENAYGQFVGPHKIKATNNKGKEKIYTAERFLIATGERPRYLGIPGDREYCISSDDL FSLPYSPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEH GVKFIRQFVPIKVEQIEAGTPGRLRVVAKSTNSEETIEGEFNTVLLAIGRDACTRKIGLE TVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYAGSKV KCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYA KIICNIKDNERVVGFHILGPNAGEVTQGFAAALKCGLTKTQLDSTIGIHPVCAEVFTTLS VTKRSGGSILQAGC // >gi|408541735|gb|JH947197.1|:subseq(15091748,228247).[93200:144898].sp ATGCCAATTGATGAGTACTGGCTGTGTCTGCCAGCCTGCCCCGCTAGCCCTTTTGTCCAC ACTGTCAGGGTGATGCGATGTCCCCACTGTGGCTGCTTTCCAAGTGTCCACCCTTCAGTC CTTGAACCACCTTACGTGGCCACCATGCTGCCGAGAAGCAGCCACAGTGCGGTGCTTCCT TCTCCATCTTCCTCCACCGAACCCCCTTCCACATCCCGAGCACCTCCTGCTTCTGCTGCT GACCCCAAGCTCTGCCTCTCACCCTCTCCACCTGACCATAGGCAGCAGAGGAATGTGCAT TCTGGGATGGTTTATCAGAAGGGGACACTTCACAAGCCATCAAGAATGAATGGCTCTGAG AACCTTCCGGAGTCCTATGACTATGACCTTATCATCATCGGAGGTGGCTCTGGAGGGCTG GCAGCAGCTAAGGCAAGGCTCTGTCCCAAGTATGACAAGAAGGTGATGGTCCTGGATTTT GTCACCCCGACCCCTCTTGGAACTAGATGGGGTCTCGGAGGAACATGCGTGAATGTGGGC TGCATACCAAAGAAGCTGATGCACCAGGCAGCTTTGCTGGGACAAGCCCTCCAGGACTCT CGCAACTATGGGTGGAAAGTCGAGGACACAGTTCAGCACGACTGGGACAAAATGACAGAA GCTGTACAAAATCACATCGGCTCGCTGAACTGGGGCTACCGGGTAGCTCTGCGGGAGAAA AAAGTCACCTACGAGAATGCTTATGGGCAGTTTGTCGGGCCCCATAAGATTAAGGCAACC AATAATAAAGGGAAAGAAAAAATTTACACAGCAGAGCGGTTTCTCATTGCGACTGGTGAA AGGCCACGCTACTTGGGAATCCCTGGCGACAGAGAGTACTGCATCAGCAGTGATGACCTT TTCTCCTTGCCGTACTCCCCGGGGAAGACCCTGGTGGTTGGAGCCTCCTATGTTGCTTTG GAATGTGCTGGATTTCTTGCAGGCATTGGTTTAGACGTCACTGTCATGGTGCGGTCCATT CTCCTTAGAGGATTTGACCAGGATATGGCCAACAAAATTGGTGAACACATGGAGGAACAT GGTGTCAAGTTCATCAGACAGTTTGTACCAATAAAAGTTGAACAAATTGAAGCAGGAACC CCAGGACGACTCCGGGTGGTGGCCAAGTCCACCAATAGTGAGGAAACCATCGAAGGAGAG TTTAACACGGTCTTGCTGGCAATTGGAAGAGATGCTTGCACAAGGAAAATTGGCTTAGAG ACTGTGGGAGTGAAGATAAATGAAAAAACGGGGAAAATACCTGTCACTGACGAGGAGCAG ACCAACGTGCCTTATATCTACGCCATTGGCGACATCCTGGAAGGGAAGCTGGAGCTCACC CCAGTGGCCATCCAGGCGGGGCGACTGCTGGCTCAGAGGCTTTACGCTGGCTCCAAAGTC AAGTGTGACTATGAAAATGTTCCAACAACTGTGTTTACACCTTTGGAGTATGGAGCCTGT GGCCTTTCTGAAGAGAAAGCTGTGGAAAAATTTGGGGAAGAAAATATTGAGGTTTACCAT AGTTACTTCTGGCCATTGGAGTGGACCATTCCATCCAGAGATAACAACAAATGTTATGCA AAAATAATCTGCAACATCAAAGACAATGAACGTGTCGTGGGCTTCCACATCCTGGGTCCA AATGCTGGAGAAGTGACACAGGGCTTTGCAGCGGCGCTGAAGTGCGGCCTGACCAAAACG CAGCTGGACAGCACGATCGGAATCCACCCCGTCTGCGCAGAGGTGTTCACGACGCTGTCG GTGACCAAGCGCTCCGGGGGAAGCATCCTCCAGGCTGGCTGC // gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise match 93200 144898 1007.08 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 93200 93508 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 93509 94547 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 94548 94683 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 94684 98962 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 98963 99028 0.00 + 2 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 99029 100000 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 100001 100120 0.00 + 2 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 100121 108442 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 108443 108585 0.00 + 2 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 108586 109362 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 109363 109478 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 109479 111053 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 111054 111279 0.00 + 1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 111280 113627 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 113628 113720 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 113721 114645 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 114646 114722 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 114723 116201 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 116202 116358 0.00 + 1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 116359 124504 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 124505 124612 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 124613 127042 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 127043 127138 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 127139 128109 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 128110 128244 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise intron 128245 144838 0.00 + . gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 gi|408541735|gb|JH947197.1|:subseq(15091748,228247) GeneWise cds 144839 144898 0.00 + 0 gi|408541735|gb|JH947197.1|:subseq(15091748,228247)-genewise-prediction-1 //