TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00001589_2.0 # Protein # Selenoprotein U3 (SelU3) # Mouse
(Mus musculus)
         (201 letters)

Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/genome
.fa 
           8768 sequences; 3,843,982,861 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|408541758|gb|JH947174.1| Elephantulus edwardii unplaced genom...   133   8e-30
gi|408541755|gb|JH947177.1| Elephantulus edwardii unplaced genom...    35   3.0  
gi|408541660|gb|JH947272.1| Elephantulus edwardii unplaced genom...    34   5.1  

>gi|408541758|gb|JH947174.1| Elephantulus edwardii unplaced genomic scaffold
                scaffold00045, whole genome shotgun sequence
          Length = 19174779

 Score =  133 bits (334), Expect = 8e-30
 Identities = 61/78 (78%), Positives = 71/78 (91%)
 Frame = -3

Query: 12       CVLKHAVTGEAVELRSLWQEKACVVAGLRRFGCMVCRWIAQDLSNLRSILDQHDVRLVGV 71
                C   +++  +AVELRSLWQE+ACVVAGLRRFGCMVCRWIA+DLS+L+ +LDQH VRLVGV
Sbjct: 15101335 CACFNSLPPQAVELRSLWQEQACVVAGLRRFGCMVCRWIAKDLSSLKGLLDQHGVRLVGV 15101156

Query: 72       GPEALGLQEFLDGGYFSG 89
                GPEALGLQEFLDGGYF+G
Sbjct: 15101155 GPEALGLQEFLDGGYFAG 15101102



 Score = 80.1 bits (196), Expect = 8e-14
 Identities = 40/61 (65%), Positives = 47/61 (77%)
 Frame = -1

Query: 22       AVELRSLWQEKACVVAGLRRFGCMVCRWIAQDLSNLRSILDQHDVRLVGVGPEALGLQEF 81
                AV  RSLWQE+ACV++   RFG MVCRWIA+D S+L+ +LD H VRLVGVG E L  QEF
Sbjct: 15168252 AVSGRSLWQEQACVLSTPWRFGRMVCRWIAKDFSSLKGLLDLHGVRLVGVGTEPLWPQEF 15168073

Query: 82       L 82
                L
Sbjct: 15168072 L 15168070



 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 24/33 (72%), Positives = 31/33 (93%)
 Frame = -3

Query: 161      HFIQKSPGDYVPQENILQALGISAEVCSSKPPQ 193
                HF QKSPGDYVPQE++L+ALGISA+ C+S+PP+
Sbjct: 15099007 HFAQKSPGDYVPQEDVLRALGISAQGCASEPPK 15098909



 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 29/50 (58%), Positives = 34/50 (68%)
 Frame = -2

Query: 27       SLWQEKACVVAGLRRFGCMVCRWIAQDLSNLRSILDQHDVRLVGVGPEAL 76
                SL Q +ACVVA   RFG MVCRWIA+D S  + + D H  +LVGVG E L
Sbjct: 15119183 SLLQGQACVVARQWRFGRMVCRWIAKDFSCFKRLQDLHGKQLVGVGTEPL 15119034



 Score = 44.7 bits (104), Expect = 0.004
 Identities = 21/22 (95%), Positives = 22/22 (100%)
 Frame = -1

Query: 107      RYNSLSILPAALGKPVRDVASK 128
                RYNSLSILPAALGKPVRDVA+K
Sbjct: 15099675 RYNSLSILPAALGKPVRDVAAK 15099610



 Score = 38.1 bits (87), Expect = 0.35
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -2

Query: 1        MNVVDLGRVGACVLKHAVTGEAVELRSL 28
                M+ +DL RVGACVLK+AVTGE   + +L
Sbjct: 15101558 MSALDLARVGACVLKNAVTGEVSRVEAL 15101475



 Score = 38.1 bits (87), Expect = 0.35
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = -3

Query: 77       GLQEFLDGGYFSGELYLDESKQIYKELGFKR 107
                G +  + G  FS ELYLDESKQ YKELGF+R
Sbjct: 15100390 GTESHVCGLNFS-ELYLDESKQFYKELGFRR 15100301


>gi|408541755|gb|JH947177.1| Elephantulus edwardii unplaced genomic scaffold
               scaffold00048, whole genome shotgun sequence
          Length = 18110590

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +2

Query: 66      VRLVGVGPEALGLQEF---LDGGYFSGELYLDESKQIYKELGFKRYNSLSILPAALGKPV 122
               +R +G+G   LGL E+    +G Y  G+++L E  ++ +   FK+  ++S    A+  P 
Sbjct: 6350792 IRCIGMGWRGLGLSEY*ITSNGNYCKGKVFLKERPRVREYCTFKKEPAVSEAVEAIASPS 6350971

Query: 123     RDVA-SKAKAVGI 134
                +++ SKA + G+
Sbjct: 6350972 LNLSRSKATSQGL 6351010


>gi|408541660|gb|JH947272.1| Elephantulus edwardii unplaced genomic scaffold
               scaffold00143, whole genome shotgun sequence
          Length = 9020561

 Score = 34.3 bits (77), Expect = 5.1
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
 Frame = +3

Query: 15      KHAVTGEAVELRSLWQEKACVVAGLRRFGCMVCRWIAQDLSNLRSILDQHDV---RLVGV 71
               +H+  GE   +R  W +    V G+   G     W+AQD +  R+++ +  +   RL G 
Sbjct: 2660631 RHSAGGEGPFMR--WIDSVTGVIGM---GVS*TVWLAQDRAEFRAVVHRVVMSRKRLDGT 2660795

Query: 72      GPEALGLQEFLDGGYFSGELYLDESKQIYKELGFKRYNSL 111
                 + L     L+  +FSG L L  S Q+Y  + FK   SL
Sbjct: 2660796 *QQKLFAFSSLNSFFFSGFLCLCSSYQVYFFIVFKSLGSL 2660915


  Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno
  me.fa
    Posted date:  Oct 18, 2013  6:06 PM
  Number of letters in database: 3,699,102,358
  Number of sequences in database:  427
  
  Database: /cursos/BI/genomes/project_2014/Elephantulus_edwardii/geno
  me.fa.01
    Posted date:  Oct 18, 2013  6:06 PM
  Number of letters in database: 144,880,503
  Number of sequences in database:  8341
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 846,670,011
Number of Sequences: 8768
Number of extensions: 11157398
Number of successful extensions: 57252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 46405
Number of HSP's gapped (non-prelim): 27701
length of query: 201
length of database: 1,281,327,620
effective HSP length: 127
effective length of query: 74
effective length of database: 1,280,214,084
effective search space: 94735842216
effective search space used: 94735842216
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)