genewise output
Score 359.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000093_2.0    1 MSAFNLLHLVTKSQPVALRACGLPS                         
                     MSAFNLLHLVTKSQPVALRACGLPS                         
                     MSAFNLLHLVTKSQPVALRACGLPS          G:G[ggg]       
gi|408541756|g100000 atgtaccctgaaaccggccgtgcctGGTTGCTG  Intron 1       
                     tcctattattcagactctgcggtcc <1-----[100076:127809   
                     gccccggtggagcgaacgactgtca                         


SPP00000093_2.0   26      SCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE          
                          SCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE          
                          SCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE          
gi|408541756|g127807 CAGGGttagaaataggttccgcaaccaccctcgacgagag          
                     -1>  cggaaaagatttcaaatgagtcctaaatcaaagca          
                          atgtagctggcttggaggggaacggctctggagaa          


SPP00000093_2.0   62                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEGEYTHHKDPGIYKCVVCGTP 
                                S:S[agt]       AFEGEYTHHKDPGIYKCVVCGTP 
gi|408541756|g127917 AGGTAAGAT  Intron 2   CAGTgtgggtaccagcgatatggtgac 
                       <2-----[127919:12954-2> ctagaacaaaacgtaagttggcc 
                                               ctaaacgtcattaatactttaaa 


SPP00000093_2.0   86 LF                          SETKFDSGS             
                     LF                          SETKFDSGS             
                     LF           K:K[aag]       SETKFDSGS             
gi|408541756|g129612 ttAAGTAAGTG  Intron 3   CAGGtgaatgtgt             
                     tt  <2-----[129620:21362-2> cacatacgc             
                     gc                          aacatccta             


SPP00000093_2.0   98                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+S+AIT+TDDFSYGM 
                               G:G[ggt]        WPSFHDVISSDAITLTDDFSYGM 
gi|408541756|g213653 GGTATGTT  Intron 4   CAGGTtcttcggaatggaacaggtttga 
                      <1-----[213654:30118-1>  gcctaattgcactctcaatcagt 
                                               gtacttgctttacttacccctgg 


SPP00000093_2.0  122 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
gi|408541756|g301256 caggaattcGTCAGTT  Intron 5   CAGtggccgcatgggcccag 
                     agtacggca<0-----[301283:31951-0>ggcatgattaagcgccg 
                     cggaacttg                       cttctgcttttattacc 


SPP00000093_2.0  148 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADK               
                     KRYCINSA+LSFT A+SSG AEGGSGV SPAQADK               
                     KRYCINSASLSFTSAESSG-AEGGSGVGSPAQADK               
gi|408541756|g319569 aattaatgtcttaaggaag ggggagggacgcgga               
                     agagtaccctctcgcaggg caggggtggccacaa               
                     aaccacgacgtcacagctt taactacccacgtcg               


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>gi|408541756|gb|JH947176.1|:subseq(9616050,419670).pep
MSAFNLLHLVTKSQPVALRACGLPSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGT
ESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSDAITLTDDFSYG
MHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSASLSFTSAESSGAEGGSGVGSPAQAD
K
//
>gi|408541756|gb|JH947176.1|:subseq(9616050,419670).[100000:319670].sp
ATGTCCGCCTTCAACCTGCTGCATTTGGTGACAAAGAGCCAGCCAGTAGCCCTGCGAGCC
TGTGGGCTTCCCTCAGGGTCATGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCTCAG
CAGGAACTGAGGAAGCGGCTAACACCCCTGCAGTACCATGTCACTCAGGAGAAAGGGACA
GAAAGTGCCTTTGAAGGAGAATACACGCATCACAAAGATCCTGGAATATATAAATGCGTT
GTTTGTGGAACACCATTGTTCAAGTCAGAAACCAAATTTGACTCCGGTTCAGGTTGGCCT
TCATTCCATGATGTGATCAGTTCTGATGCAATCACTCTTACAGACGACTTCTCCTATGGG
ATGCACAGGGTGGAAACAAGCTGTTCTCAGTGCGGTGCTCACCTTGGGCACATTTTTGAT
GATGGACCTCGTCCAACCGGCAAAAGATACTGCATAAACTCGGCATCCCTGTCTTTCACA
AGCGCAGAGAGCAGTGGTGCTGAAGGAGGCAGTGGAGTCGGCAGCCCAGCCCAGGCTGAC
AAG
//
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	match	100000	319670	359.68	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	100000	100075	0.00	+	0	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	intron	100076	127809	0.00	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	127810	127918	0.00	+	2	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	intron	127919	129541	0.00	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	129542	129619	0.00	+	1	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	intron	129620	213624	0.00	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	213625	213653	0.00	+	1	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	intron	213654	301184	0.00	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	301185	301282	0.00	+	2	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	intron	301283	319517	0.00	+	.	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
gi|408541756|gb|JH947176.1|:subseq(9616050,419670)	GeneWise	cds	319518	319670	0.00	+	0	gi|408541756|gb|JH947176.1|:subseq(9616050,419670)-genewise-prediction-1
//