
genewise output
Score 149.53 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000110_1.0   39 RVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEVTLLRSDNS     
                     RVYGR+AAALSQAL+LEAP+LPV+VNP+KPRRGSFEVTL R D S     
                     RVYGRNAAALSQALRLEAPKLPVRVNPAKPRRGSFEVTLQRPDGS     
gi|408541519|gb50021 cgtgcagggcacgcccggcaccgcgacgaccagatggaccccgga     
                     gtaggaccctgactgtaccatctgtaccacggggtatctagcagg     
                     cccgcccgcgcgggcggccgttcggcccgcggcccggggggcccc     


SPP00000110_1.0   84                           VELWTGIKKGPPRKLKFPEPQEV 
                                                ELWTGIKKGPPRKLKFPEPQ V 
                               R:S[agt]        AELWTGIKKGPPRKLKFPEPQVV 
gi|408541519|gb50156 AGTGAGTG  Intron 1   CAGGTggctagaaagcccacatcgccgg 
                      <1-----[50157:50251]-1>  catgcgtaagccgatatcacatt 
                                               agcgtgtgggcgcacgctgcggg 


SPP00000110_1.0  108 VEELKKYL                                          
                     VE+LKKYL                                          
                     VEQLKKYL                                          
gi|408541519|gb50323 ggccaatc                                          
                     taataaat                                          
                     ggggggcc                                          


//
Making a S in phase 1 intron
>gi|408541519|gb|JH947413.1|:subseq(1207675,100349).pep
RVYGRNAAALSQALRLEAPKLPVRVNPAKPRRGSFEVTLQRPDGSSAELWTGIKKGPPRK
LKFPEPQVVVEQLKKYL
//
>gi|408541519|gb|JH947413.1|:subseq(1207675,100349).[50021:50346].sp
CGCGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGGAGGCCCCCAAG
CTTCCTGTCCGGGTGAACCCCGCCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCAG
CGGCCCGACGGCAGCAGTGCAGAGCTCTGGACTGGGATTAAGAAGGGGCCCCCGCGCAAA
CTCAAGTTCCCTGAGCCCCAGGTGGTGGTGGAGCAGCTGAAGAAGTACCTC
//
gi|408541519|gb|JH947413.1|:subseq(1207675,100349)	GeneWise	match	50021	50346	149.53	+	.	gi|408541519|gb|JH947413.1|:subseq(1207675,100349)-genewise-prediction-1
gi|408541519|gb|JH947413.1|:subseq(1207675,100349)	GeneWise	cds	50021	50156	0.00	+	0	gi|408541519|gb|JH947413.1|:subseq(1207675,100349)-genewise-prediction-1
gi|408541519|gb|JH947413.1|:subseq(1207675,100349)	GeneWise	intron	50157	50251	0.00	+	.	gi|408541519|gb|JH947413.1|:subseq(1207675,100349)-genewise-prediction-1
gi|408541519|gb|JH947413.1|:subseq(1207675,100349)	GeneWise	cds	50252	50346	0.00	+	2	gi|408541519|gb|JH947413.1|:subseq(1207675,100349)-genewise-prediction-1
//
