genewise output
Score 370.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000104_1.0    1 MVAAVATAWLLLWAAACAQSEQDFYDFKAVNIRGKLVSLEKYRGS     
                     MV A   AWLLL AAA AQ EQDFYDFK VNIRGKLVSLEKYRGS     
                     MVVAAVAAWLLLSAAASAQREQDFYDFKVVNIRGKLVSLEKYRGS     
gi|408541798|gb99946 agggggggtccctgggtgccgcgttgtaggaacgacgtcgatcgt     
                     tttcctccgtttccccccagaaataatattatggattctaaaggc     
                     gatagcacggtggcacgaggggcctccggtccgcgggggggcccg     


SPP00000104_1.0   46                        VSLVVNVASECGFTDQNYRALQQLQR 
                                            VSLVVNVASECGFTDQ+YR LQQLQR 
                                            VSLVVNVASECGFTDQHYRELQQLQR 
gi|408541798|g100081 GTGAGTG  Intron 1   TAGgtcggaggagtgtagcctcgccctcc 
                     <0-----[100081:11280-0>tctttatcgaggtcaaaagataatag 
                                            gcgggcgctgtccgcgtcaagggagg 


SPP00000104_1.0   72 DLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPD+N+EIE+FARRTYSVSFPMFSK+AVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAVT 
gi|408541798|g112879 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaggga 
                     atgcaatattctcgaatgaaacagaaatagtcggcagtctcttgatctc 
                     tgtcccctgtcccccgtcaggttccagtgcttcacctcttcgtcgcact 


SPP00000104_1.0  121 GTGAHPAFKYLT                          TSGKEPTWNFW 
                     G+GAHPAFKYLT                          TSGKEPTWNFW 
                     GSGAHPAFKYLT          Q:E[gag]        TSGKEPTWNFW 
gi|408541798|g113026 gtggccgtatcaGGTGAGTC  Intron 2   TAGAGatgagcatatt 
                     gcgcacctaatc <1-----[113063:12269-1>  ccgaaccgatg 
                     cttcctccgtgc                          ttgggccgccg 


SPP00000104_1.0  145 KYLVDPDGKVVGAWDPTVPVAEIKPRITEQVMKLILRKREDL        
                     KYLV PDGKV GAWDPTV V EIKP+I   V KLILRKREDL        
                     KYLVAPDGKVAGAWDPTVSVEEIKPQIRALVRKLILRKREDL        
gi|408541798|g122735 atcggcggaggggtgcagtgggaaccaagcgaacaccacggt        
                     aattccagatcgcgacctctaatacatgcttgatttgagaat        
                     gcggcccggaaatgtatgcgggcatgcagtgggcagggaata        


//
Making a E in phase 1 intron
>gi|408541798|gb|JH947134.1|:subseq(8183806,222860).pep
MVVAAVAAWLLLSAAASAQREQDFYDFKVVNIRGKLVSLEKYRGSVSLVVNVASECGFTD
QHYRELQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAVT
GSGAHPAFKYLTETSGKEPTWNFWKYLVAPDGKVAGAWDPTVSVEEIKPQIRALVRKLIL
RKREDL
//
>gi|408541798|gb|JH947134.1|:subseq(8183806,222860).[99946:122860].sp
ATGGTAGTTGCAGCGGTCGCAGCCTGGCTGCTTCTGTCGGCCGCAGCCTCGGCACAGCGG
GAGCAGGACTTCTATGACTTCAAGGTGGTTAACATCCGGGGCAAGCTGGTGTCGCTGGAG
AAGTACCGCGGCTCGGTGTCCCTGGTGGTGAACGTGGCCAGTGAGTGTGGCTTCACGGAC
CAGCATTACCGAGAACTGCAGCAGTTACAGCGGGATCTGGGTCCCCACCACTTCAATGTG
CTTGCCTTCCCCTGCAACCAGTTTGGCCAACAGGAGCCTGATAGCAACAAAGAGATTGAG
AGCTTTGCTCGCCGAACCTACAGTGTCTCTTTTCCCATGTTTAGCAAGGTCGCAGTCACT
GGCTCTGGTGCCCACCCTGCCTTCAAGTATCTGACCGAGACTTCTGGGAAGGAGCCCACC
TGGAACTTCTGGAAGTACCTGGTGGCCCCCGACGGGAAGGTAGCAGGAGCTTGGGATCCA
ACTGTGTCCGTGGAGGAGATCAAACCTCAGATCAGAGCGCTTGTGAGGAAGCTCATACTG
CGGAAGCGAGAAGATTTA
//
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	match	99946	122860	370.46	+	.	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	cds	99946	100080	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	intron	100081	112800	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	cds	112801	113062	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	intron	113063	122699	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(8183806,222860)	GeneWise	cds	122700	122860	0.00	+	2	gi|408541798|gb|JH947134.1|:subseq(8183806,222860)-genewise-prediction-1
//