_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-43
 Query name: gi|168823450|ref|NP_001108350.1| selenoprotein K [Canis lupus familiaris]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/241335086/tempfiles/temptarget.fasta
 Chromosome: gi|432088519|gb|KB114370.1|:subseq_2644302,100242_ Strand: +
 Positions:
 -Exon 1  50000        50281

 Redox box: no

Query   MVYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRGYGNSSDSRYDDGRGPPGNPPRRMGRINHLRGPSPPPMAGGUGR
        |||| | |||||||||||||||/||||||| |||||||| |||/|/|| |||||||||||||||||||| |/|||||||||||||||| |||||
Target  MVYIENRQVLDSRSQSPWRLSLVTDFFWGIVEFVVLFFKPLLQKDMKKGRGYGNSSDSRYDDGRGPPGNLPKRMGRINHLRGPSPPPMPGGUGR
        agtagaacgtgaaactctatttgagtttgaggtggtttaccccagaaagagtgattgtatgggagccgaccaaagcaacccgcacccacggtga
        ttataagattagggaccggtcttcattggttattttttacttaaataagggagaccacgaaagggccgatcagtggtaatggcgccctcggggg
        gcccacaaggccgtgcagaatgaatccgaatgcgtgtcatgtgatgagaaccacattcatttaagcaactcaagtacttgtcctttagttaaag
                                                                                                   *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 122 ; UGA-SECIS: 128

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432088519|gb|KB114370.1|:subseq_2644302,100242_ Strand = + Positions = 50404 - 50490
 Found by:  Infernal (score=21.79) Covels (score=34.14)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -6.79

         ..(((((((..............(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((................))))))))))))]]}......-...))))})...
 target  UACUCUGUGUCCUCACAGACGAAUGAGGUCGUGUUGGGAAUUCCCUCACAGGGAUCUGGCAUGACUGACAUGCAA-UUCUAUAAAUGC
                                ****           ^^                         ****