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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-21
 Query name: gi|30231240|ref|NP_840079.1| 15 kDa selenoprotein precursor [Danio rerio] >gi|172046121|sp|Q802F3.2|SEP15_DANRE RecName: Full=15 kDa selenoprotein; Flags: Precursor >gi|29165356|gb|AAO65272.1| 15 kDa selenoprotein SeP15 [Danio rerio]
 Query range: 17-153  (total 153)

 Target: /data/www-rg/seblastian_results/105620023/tempfiles/temptarget.fasta
 Chromosome: gi|432107065|gb|KB105184.1|:subseq_1997890,100080_ Strand: +
 Positions:
 -Exon 1  57820        57987
 -Exon 2  75244        75307
 -Exon 3  81102        81151
 -Exon 4  81996        82124

 Redox box: no

Query   LASYGAELSSEACRELGFSSNLLCSSCELLGQFSLNQLDLPCRQCCQEEAQLENRK <---Intron---> LYPGAILEVCGUKLGRFPQVQA <---I
        ////||| |||||||||||||||||||/|||||/| |||  || ||||||| ||/| <  17256bp   > || ||||||||||||||||||| <   5
Target  MSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFENKK                LYAGAILEVCGUKLGRFPQVQA      
        atgtgggtttggtagtgttaatctattgccgctaccccgcgtagttcgggctgaaa                ctgggacggtgtatgatccgcg      
        tcctgcatccacggatgtcgattggcgattgatattatacagggggaaacataaaa                tacgcttatgggatggtcata       
        gtccgagtaagtcagacccccgccccttttagccgtggttctaactgagaatacag                ataatttactaaagggcaaca       
                                                                                           *                

Query   ntron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
        794bp   > |||||||||||||||| <   844bp    > |||||||||||||||||||||||||||||||||||||||||||
Target            FVRSDKPKLFRGLQIK                YVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
                  tgaagacactagccaa                tgcgtgcgcactggagaagggcaacataagagggtcagatgca
                 cttggaacattggtata                atggcacttattaaagatcaatgttagacagtaattgaatagt
                 ttcattacaacaagacg                ttttactaagtgtctgcttaaacccagcactcaatgtagggca
                                                                                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 585 ; UGA-SECIS: 792

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432107065|gb|KB105184.1|:subseq_1997890,100080_ Strand = + Positions = 82710 - 82783
 Found by:  Infernal (score=34.36) Covels (score=25.65)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -17.16

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         ..(((((((.--....{[[((((((((((((...............))))))))).)))]]}..--..-.)))))))..
 target  CAGAUUUGCG--UUAAUGAAGACUACACAGAAAACCUUUUUCAGGAUUUGUGUGGAUCUGAUAG--UU-AGCAAAUUCU
                         ****           ^^^                        ****