_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-24
 Query name: gi|378548222|ref|NP_001243744.1| glutathione peroxidase 3 precursor [Cricetulus griseus]
 Query range: 29-226  (total 226)

 Target: /data/www-rg/seblastian_results/72356640/tempfiles/temptarget.fasta
 Chromosome: gi|432098791|gb|KB109247.1|:subseq_1900000,100000_ Strand: +
 Positions:
 -Exon 1  87936        88092
 -Exon 2  89203        89320
 -Exon 3  89766        89865
 -Exon 4  90486        90704

 Redox box: no

Query   KTDCHGGMSGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYUGLTDQYLA <---Intron---> QNTLQEELGPFGLVILGFPCNQFGKQEPGEN
        /|||| |/|||||||||||//||||||||||||||||||||||||||| ||/  <   1110bp   >  | ||||| ||||||||||||||||||||||
Target  QTDCHAGVSGTIYEYGALTLNGEEYIPFKQYAGKYVLFVNVASYUGLTSQYVE                LNALQEELQPFGLVILGFPCNQFGKQEPGEN
        cagtcgggagaatgtggcacagggtactactggatgctgaggattgcaactgg                cagccggccctgcgacgtctactgacgcgga
        acagacgtggctaaagctctagaaatctaaacgaattttatcgaggtcgaat                atactaaatactgttttgtcgaatgaaacgaa
        ggcctttgcccctgtacccccgggccccggtccaccctccgcccacggcgct                agtaagaggaattgctgcccccataaggaagc
                                                    *                                                       

Query   SEILPSLK <---Intron---> YVRPGGGFVPNFQLFEKGDVNGEKEQKVYTFLK <---Intron---> NSCPPTAELLGSPGRLFWEPMKIHDIR
        |||||||| <   445bp    > /||||||/||||||||||||||| ||||||||| <   620bp    > |||||| |||||| |||||||||||||
Target  SEILPSLK                HVRPGGGYVPNFQLFEKGDVNGENEQKVYTFLK                NSCPPTTELLGSPKRLFWEPMKIHDIR
        tgacctca                cgccgggtgcatcctgagggaggagcagtatca                attccaagccgtcaccttgcaaacgac
        cattccta                atgcgggatcatattaagatagaaaaatactta                acgccccattgccagttgactataatg
        ggtatcc                gttaatgcccctcactgaatgcggcgggccgcgg                ccctccggcgcgtacccgacggctccc
                                                                                                            

Query   WNFEKFLVGPDGKPVMRWYHRTTVSNVKMDILSYMRRQAALGARWK
        ||||||||||||||/|||||||||||||||||/|/| ||||    |
Target  WNFEKFLVGPDGKPIMRWYHRTTVSNVKMDILAYLREQAALAVEEK
        tatgatcggcggacaacttccaagaagaagacgttagcggcgggga
        gataatttgcagacttggaagcctgatatattcatgaacctctaaa
        gctggcggggctaccgcgccgcgccccggccgccggggacggcagg
                                                      
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 611 ; UGA-SECIS: 1070

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432098791|gb|KB109247.1|:subseq_1900000,100000_ Strand = + Positions = 91316 - 91389
 Found by:  Infernal (score=23.59) Covels (score=29.67)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -22.92

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((({((---((..([[((({(((({(((.....--........)))}))))})))]])......-.))))}))))..
 target  AGUGGCGUC---UCUAUGAAGGAGGGGCCCGAAGCC--CUAGUGGGCGGACCUCCCCUGAGCCUGUC-UGAGGGGCCAGC
                         ****           ^^                        ****