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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 1e-14
 Query name: gi|25014099|ref|NP_067060.2| selenoprotein K [Homo sapiens] >gi|168823448|ref|NP_001108349.1| selenoprotein K [Pan troglodytes] >gi|226874800|ref|NP_001152853.1| selenoprotein K [Macaca mulatta] >gi|190352222|sp|Q9Y6D0.3|SELK_HUMAN RecName: Full=Selenoprotein K; Short=SelK >gi|190352223|sp|Q4R8M1.3|SELK_MACFA RecName: Full=Selenoprotein K; Short=SelK >gi|24431324|gb|AAN61473.1| selenoprotein K [Homo sapiens] >gi|34783186|gb|AAH13162.2| Selenoprotein K [Homo sapiens]
 Query range: 1-94  (total 94)

 Target: /data/www-rg/seblastian_results/656335183/tempfiles/temptarget.fasta
 Chromosome: gi|432115847|gb|KB100898.1|:subseq_860350,100074_ Strand: -
 Positions:
 -Exon 1  55363        55381
 -Exon 2  51644        51734
 -Exon 3  49992        50075
 -Exon 4  48553        48640

 Redox box: no

Query   MVYISNG <---Intron---> QVLDSRSQSPWRLSLITDFFWGIAEFVVLF <---Intron---> FKTLLQQDVKKRRSYGNSSDSRYDDGRG <-
        ||||/|| <   3628bp   > |||||||||||||||||||||||||||||| <   1568bp   > ||||||||||| | |||||||||||||| < 
Target  MVYIANG                QVLDSRSQSPWRLSLITDFFWGIAEFVVLF                FKTLLQQDVKKGRGYGNSSDSRYDDGRG   
        agtagag                cgtgaaactctatttaagtttgaggtggtt                taaccccggaagagtgattgtatgggag   
        ttatca                gattagggaccggtcttcattggtcattttt                tacttaaataagggagaccacgaaaggg   
        gcccgc                aaggccgtgcagaatgaatccgaatgcgtg                tcatgtgatgagaaccacattcatttaa    
                                                                                                            

Query   --Intron---> PPGNPPRRMGRINHLRGPSPPPMAGGUGR
          1351bp   > ||||||||||||||| |||||||/|||||
Target               PPGNPPRRMGRINHLHGPSPPPMSGGUGR
                     ccgaccaaagcaacccgcacccatggtga
                     ccgaccggtggtaatagcgccctcggggg
                    gcaactcaagtatttgtcctttagttaaag
                                               *  
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 373 ; UGA-SECIS: 379

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432115847|gb|KB100898.1|:subseq_860350,100074_ Strand = - Positions = 48179 - 48093
 Found by:  Infernal (score=21.79) Covels (score=34.14)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -6.79

         ..(((((((..............(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((..............{[[((((((((((((................))))))))))))]]}......-...))))})...
 target  UACUCUGUGUCCUCACAGACGAAUGAGGUCGUGUUGGGAAUUCCCUCACAGGGAUCUGGCAUGACUGACAUGCAA-UUCUAUAAAUGC
                                ****           ^^                         ****