_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-21
 Query name: gi|315630398|ref|NP_001186855.1| selenoprotein S [Callithrix jacchus]
 Query range: 72-190  (total 190)

 Target: /data/www-rg/seblastian_results/616273938/tempfiles/temptarget.fasta
 Chromosome: gi|432090942|gb|KB112968.1|:subseq_986001,100230_ Strand: -
 Positions:
 -Exon 1  52943        53047
 -Exon 2  50174        50263
 -Exon 3  50002        50080
 -Exon 4  49661        49743

 Redox box: no

Query   PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLKQ <---Intron---> LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ <---Intron---> EED
        |/ ||/|||||||||||||||||||||/|||||/| <   2679bp   > |||||||/|||||||/||||||/|/|/||| <    93bp    > |||
Target  PEDVVRRQEALAAARLKMQEELNAQVERHKEKLRQ                LEEEKRRRKIEMWDSLQEGKSYRGHARKPQ                EED
        cggggaccggtgggccaacggcagcggacagaccc                cgggacaaaagatgaccggaatagcgaacc                ggg
        caattggaactcccgtataaatacatagaaaatga                taaaagggatatgagtaagagaggacgaca                aaa
        cgctgagggtggcgcgagggaaccaaagcggacgg                tgagagaggtaggccgaggaccattcggtg                aac
                                                                                                            

Query   SPGPSTSSVIPKRKSDRKPLRGGG <---Intron---> YNPLSGEGGGTCSWRPGRRGPSSGGUG
        /| ||||| /||| /||||||||| <   258bp    > |||||||||| |/|||||||||/||||
Target  NPSPSTSSSLPKRPADRKPLRGGG                YNPLSGEGGGACTWRPGRRGPSAGGUG
        acactattaccaccggaacccggg                tacttggggggtatccgccgctgggtg
        acgcccccgtcagccagactggg                gaactcgagggcgcggcggggcccgggg
        ccctttgccccggaacggcatgt                ttctgtgaaaaccggatacacaatcaac
                                                                         * 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 242 ; UGA-SECIS: 245

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432090942|gb|KB112968.1|:subseq_986001,100230_ Strand = - Positions = 49418 - 49331
 Found by:  Infernal (score=22.7) Covels (score=35.21)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -11.31

         ..(((((((..............(((((((((((((((.................)))))))))))))))..........)))))))..
 model   uucggucaugcg-------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         .(((((({(..............([[{(({{((((((...................))))))}}))}]])......-...)})))))).
 target  UCUCUGUGAUAGGUUGCGUCGAAUGACGUCCUCCUUGUAAAUGGUGAAGCCACCACCAAGGAUUACCGAGGCUCAC-AGUUGACGGGGU
                                ****           ^^^                         ****