_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-60
 Query name: gi|550822380|ref|NP_001272641.1| glutathione peroxidase 4 precursor [Capra hircus] >gi|262064802|gb|ACT53163.2| phospholipid hydroperoxide glutathione peroxidase 4 [Capra hircus] >gi|263043513|gb|ACY69862.1| phospholipid hydroperoxide glutathione peroxidase 4 [Capra hircus]
 Query range: 23-200  (total 200)

 Target: /data/www-rg/seblastian_results/527754448/tempfiles/temptarget.fasta
 Chromosome: gi|432101097|gb|KB108036.1|:subseq_1386629,100035_ Strand: +
 Positions:
 -Exon 1  48944        49065
 -Exon 2  49139        49283
 -Exon 3  49410        49561
 -Exon 4  49664        49688
 -Exon 5  49873        49932
 -Exon 6  50006        50035

 Redox box: no

Query   AAPGLASTMCASRDDWRCARSMHEFSAKDIDGRMVNLDKYR <---Intron---> GHVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCN
        /|  //   ||||||||||/||||||||||||||||||||| <    73bp    > | |||||||||||||||||||||||||||||||||||||||||
Target  SAAPVSVLQCASRDDWRCAQSMHEFSAKDIDGRMVNLDKYR                GFVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCN
        tggcgtgtctgtcggtctgctacgttgagaggcagacgatc                gtgtagaaggtctgaaggataccggccgctggtgtcacgtcta
        cccctcttagccgaagggcactaatccaataggttataaag                gttgttcatccaggacataacattatacgacaggtgttctcga
        actcgtcggccctccgcttgagcgcacgcccgcgtcgcgc                gccgcccccgcgaacaacacctgtccgccattgctagcgtctcc
                                                                             *                              

Query   QFGRQ <---Intron---> EPGSNAEIKEFAAGYNVKFDLFSKICVNGDDAHPLWKWMKVQPKGRGMLGN <---Intron---> AIKWNFTK <--
        ||||| <   126bp    > |||/||||||||||||||||//||||||||||||||||||  |||||/||| <   102bp    > |||||||| <  
Target  QFGRQ                EPGTNAEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKTHPKGRGILGN                AIKWNFTK    
        ctgac                gcgaaggaagtgggtagatgataaatgaggggccctataaaccagagacga                gaatataa    
        atgga                acgcacataatccgaatatatagatgtagaacactgagtacacagggttga                ctagatca    
        gcggg                gagttcgcagctccttcactgtcgctgcattcctgggggactcgggccga                tccagcccg    
                                                                                                            

Query   -Intron---> FLIDKNGCVVKRYGPMEEPL <---Intron---> VIEKDLPCYL
         184bp    > |||||||||||||||||||  <    73bp    > ||||||||||
Target              FLIDKNGCVVKRYGPMEEPQ                VIEKDLPCYL
                    tcagaagtggactgcaggcc                gagagccttc
                    tttaaaggttagagctaaca                ttaaatcgat
                    cctcgtttggggttcgagcg                caggcgccct
                                                                  
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 57 ; UGA-SECIS: 429

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432101097|gb|KB108036.1|:subseq_1386629,100035_ Strand = + Positions = 50093 - 50166
 Found by:  Infernal (score=27.72) Covels (score=31.8)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -13.36

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({{{((((......([[{{(((((((([(...............)]))))))))}}]])----...))))}}})..
 target  UUCCACCCGGCACUCAUGACAGUCUGUCUAAAAACCAGCCUGCUGGUGGGGCAGACCCGAG----AACCCGGCAUGUU
                         ****           ^^^                       ****