_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-30
 Query name: gi|281371497|ref|NP_001163895.1| selenoprotein X, 1 [Equus caballus]
 Query range: 1-113  (total 116)

 Target: /data/www-rg/seblastian_results/625648569/tempfiles/temptarget.fasta
 Chromosome: gi|432102504|gb|KB107323.1|:subseq_598712,100000_ Strand: +
 Positions:
 -Exon 1  47934        47981
 -Exon 2  49997        50152
 -Exon 3  50491        50625

 Redox box: no

Query   MSFCSFFGGEIFQNHF <---Intron---> EPGIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK <---Intron---> 
        ||||||||         <   2015bp   >  ||/||||||||||||||||/||||||||||||||||||||||||||||||| <   338bp    > 
Target  MSFCSFFGXXXXXXXX                PPGVYVCAKCGYELFSSRSKFAHSSPWPAFTETIHADSVAKRPEHNRPEALK                
        atttattgnnnnnnnn                ccggtgtgatgtgcttactatgcttctcgtagaacggaggaccgcaccggta                
        tctggttgnnnnnnnn                ccgtatgcaggaattcggcatcacccgcctcactacagtcagcaaagcacta                
        ggcccccgnnnnnnnn                tatccgccgtccgcccccagtgcagagaccggtcctctgcgtagccgtacag                
                                                                                                            

Query   VSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKGKESSAS
        ||||||||||||||||||||/||||||||||||||||||/ /| |
Target  VSCGKCGNGLGHEFLNDGPKKGQSRFUIFSSSLKFVPKGECASGS
        gttgatgagtgcgtcaggcaagctcttataatcatgcaggtgtga
        tcggaggagtgaattaagcaagacgtgttggctattcagagccgg
        cctcgtccagccgcgccccgggggccaaccctggtctgtgtccgc
                                  *                  
 Sequence until next stop: 
TGGGAATAG
 W  E  * 

 Distance CDS-SECIS: 1338 ; UGA-SECIS: 1392

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432102504|gb|KB107323.1|:subseq_598712,100000_ Strand = + Positions = 51964 - 52034
 Found by:  Infernal (score=37.67) Covels (score=26.09)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -22.24

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....([[{{((((((((((.....-.........))))))))))}}]])..--..-.))))))}).
 target  CUCAGUCAC---UGCAUGAUUCACUCUGGUUAAACC-CUUCCAGGCAGCCAGAGUGUUGAAGA--UC-UGUGACUUGU
                         ****           ^^^                       ****