_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-76
 Query name: gi|253314489|ref|NP_001156611.1| glutathione peroxidase 2 [Bos taurus] >gi|296482981|tpg|DAA25096.1| TPA: glutathione peroxidase 2 [Bos taurus]
 Query range: 1-190  (total 190)

 Target: /data/www-rg/seblastian_results/318568157/tempfiles/temptarget.fasta
 Chromosome: gi|432107930|gb|KB104801.1|:subseq_1637463,100221_ Strand: +
 Positions:
 -Exon 1  50000        50221
 -Exon 2  52998        53345

 Redox box: no

Query   MAYIAKSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRRLVVLGFPCNQFGHQ <---Intron---> ENCQNEEILN
        ||/|||||||||||||||||/|||||||||||||||||||||||||/||||||||||||||||||||||||||| <   2776bp   > ||||||||||
Target  MAFIAKSFYDLSAISLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRRLVVLGFPCNQFGHQ                ENCQNEEILN
        agtagatttgcagaacgggaagtaatcgaggcagaggtctgaaacgtaccagcctctccccggcgtctactgcc                gatcaggaca
        tcttcactaatgctgtagaatatactgggctttaatcctggcccgaacataataggtcggttttgtcgaatgaa                aagaaaatta
        gtctcggccccttccgtgggatctgcacgaggtgtaagcacactgcccgccggacctcgcggttcctctatatg                gctgtggcgc
                                               *                                                            

Query   SLKYVRPGGGFQPTFTLVQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKFIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKR
        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||||||||||||||||||||
Target  SLKYVRPGGGFQPTFTLAQKCDVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKYIIWSPVRRSDVSWNFEKFLIGPEGEPFRRYSRTFQTINIEPDIKR
        acatgccgggtccatacgcatggagcagccgtgtcagacctctggcttcaagcataatacgcctggttatgatcagcgggctcctacatcaaaagcgaac
        gtaatgcgggtacctctcaagatagaaaacttcataaatcacaaactcttcacaattggctggcatcgataatttgcagactggaggctactatacatag
        ccgccctgtacgcccctcggttgttgtgttccccggcgccccttcattcgctcgcctgccgccatgcgctggctcgggggccaccccccaccccgcccgc
                                                                                                            

Query   LLKVAI
        ||||||
Target  LLKVAI
        ccagga
        ttatct
        ccatca
              
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 219 ; UGA-SECIS: 669

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432107930|gb|KB104801.1|:subseq_1637463,100221_ Strand = + Positions = 53565 - 53629
 Found by:  Infernal (score=27.33) Covels (score=24.15)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -20.8

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---(...([[{(({[((((((......-..-----...))))))]}))}]])----...)))))))...
 target  GGCCUUCAC---AGAAUGAUGGCACCGUCCUAAACC-UG-----UAUGGGCGGGAUCUGAG----ACAUGUGAAGAGC
                         ****           ^^^                       ****