_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-34
 Query name: gi|260081569|gb|ACX31205.1| deiodinase 1 [Ovis aries]
 Query range: 1-146  (total 146)

 Target: /data/www-rg/seblastian_results/195468526/tempfiles/temptarget.fasta
 Chromosome: gi|432095569|gb|KB110890.1|:subseq_2512362,100074_ Strand: +
 Positions:
 -Exon 1  10054        10090
 -Exon 2  22350        22493
 -Exon 3  47826        48025
 -Exon 4  50009        50065

 Redox box: no

Query   SGERCSIWDFMQG <---Intron---> NRPLVLNFGSCTUPSFIFKFDQFKRLIEEFGSVADFLIIYIEEAHASD <---Intron---> GWAFKNN
        ||/|| ||||||| <  12259bp   > ||||||||||||||||/|||||||||||/| //||||/|||||||||| <  25332bp   > |||||||
Target  SGQRCHIWDFMQG                NRPLVLNFGSCTUPSFLFKFDQFKRLIEDFSAIADFLVIYIEEAHASD                GWAFKNN
        tgcatcatgtacg                aaccgcatgatatcttctatgctaacaggtagaggtcgatagggcgtg                gtgtaaa
        cgaggatgatta                gagctttatgggcgcctttataatagttaatgctcattttataacacc                aggctaaa
        aaggtctgccga                ccgagggttattcatattcatcacgattactccaattcctctaaataa                tcgttgcc
                                                 *                                                          

Query   VDIKNHRNLQDRLRAAHLLLDRSPQCPVVVDTMKNQSSSCYAALPERLYVLQEGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEK
        | |||||||||||/||||||||||/|||||||| ||||  |||||/||||||||||||| <   1983bp   > |||||||||||||||||||
Target  VVIKNHRNLQDRLQAAHLLLDRSPRCPVVVDTMTNQSSQLYAALPDRLYVLQEGRILYK                GKPGPWNYHPEEVRAVLEK
        ggaaaccaccgcccggccccgaacctcggggaaaacaacctggccgactgccggaacta                gacgctatccgggcggcga
        tttaaagataagtaccatttaggcggctttactcaaggatacctcagtattaaggttaa                gacgcgaaacaatgcttaa
        gccgtcgccgcccgaccgggcgccgctgggcaggcgccgccgggccgccgcggcgcccg                tgtctgctcagattttgaa
                                                                                                      
 Sequence until next stop: 
CTCCGCAGTTAA
 L  R  S  * 

 Distance CDS-SECIS: 918 ; UGA-SECIS: 1278

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|432095569|gb|KB110890.1|:subseq_2512362,100074_ Strand = + Positions = 50984 - 51055
 Found by:  Infernal (score=28.43) Covels (score=23.21)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -7.98

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...((((((.--....{[[{(({((((((..........-----....))))))}))}]]}......-...))))))...
 target  UUCAUAUUUG--UUUAUGAUGGCCACAGCCUAAAGUACA-----CACAGCUGUGACUUGAUUUGAAA-AUAAAAUAUCUG
                         ****           ^^^                       ****