Output_id: TR.22.selenocysteine
---------- --------------------
-Species Chlorocebus sabaeus -Taxid 60711
-Target /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782571|gb|CM001963.1|
-Program genewise
-Query name gi|29476880|gb|AAH50032.1| MODIFIED TXNRD3 protein [Homo sapiens]
-Query range 8-683 length:683 coverage: 0.99
-Profile range 8-1345 length:1345 coverage: 0.99 sec_position: [1344]
-ASI: 0.397 (ignoring gaps: 0.5495)
-AWSIc: 0.8019 Z-score: 0.834
-AWSIw: 0.805 Z-score: 1.101
-State kept
------- alignment -------
Query GSVRRPSGPVPAPQPP-AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERS
||||||| | | || ||||||||| | |||||/|/||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Target GSVRRPSAQVSVPPPPPAFRFVSRPGPAGSESETVEQSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSSSSEAREELRRRLRGLIERS
gagccctgcgtgcccccgtctgaacgcggagagaggctccctcgcgaggggcacctgcgcggcgttccgccgccttcgcaattggcggccccccgcagca
ggtggcccatctcccccctgttggcgccggagactaacccaccgcgacgaccaggcgatggcgttcccgggcgtcccgcggccacgaatgggtggttagg
cttcccacgctgggagtgtgtgcgccgcgcacgcgggggaggagggggctcccccgctcaggcggggggccccggccgcccgcgccgggccccgcctgcc
Query RVVIFSKSYCPHSTR <---Intron---> VKELFSSLGVECNVLELDQVD <---Intron---> DGARVQEVLSEITNQKTVPNIFVNKVHVGGCD
||/|||||||||||| < 10176nt > ||||||||||||||||||||| < 1299nt > |||/||||||||||||||||/|||||||||||
Target RVMIFSKSYCPHSTR VKELFSSLGVECNVLELDQVD DGAKVQEVLSEITNQKTVPNVFVNKVHVGGCD
cgaataaattccaac gagcttttgggtagtgcgcgg gggagcggctgaaacaagcagtgaagcgggtg
gttttgagagcagcg gt ag taattcctgtagattataat gt ag aagcataattcatcaaactcatttaatatggga
gggcccgcctccttg gaactttgacatccgattat ttgcgtaaggaacttgatgctttgtagtatatc
Query QTFQ <---Intron---> AYQSGLLQKLLQEDLAYDYDLIIIGGGSGGLSCAK <---Intron---> EAAILGKKVMVLDFVVPSPQGTSWG <--
|||| < 1878nt > |||||||||||||| |||||||//||||||||||| < 466nt > ||||||||||||||||||||||||| <
Target QTFQ AYQSGLLQKLLQEDSAYDYDLIVVGGGSGGLSCAK EAAILGKKVMVLDFVVPSPQGTSWG
catc gtcagttcacccggtgtgtgcagggggtggcttga gggatgaagagcgtggctccgattg
acta gt ag caaggttaattaaaccaaaattttgggcggtcgca gt ag accttgaattttatttcccagccg g
atcg atgttgaggctgataattttccttttttcctatgg atctgagatggacttcgatgcacg
Query -Intron---> LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQV <---Intron---> RHNWETMTKAIQNHISSLNWGYRLSLREKAVA
1797nt > |||||||||||||||||||||||||||||||||||||||| < 8958nt > /|||||||||||||||||||||||||||||||
Target LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQV KHNWETMTKAIQNHISSLNWGYRLSLREKAVA
cggatgaggtacaataccggctgcgttgtaatgtgtaccg acatgaaaagacacaatcatgtattcagaggg
t ag gtggcgtatggtcaattaaccttgactgacgatggaaaaa gt ag taaagactcactaaatgctaggagtctgaactc
tttcttatattttgaggtgtctgggagtcagatcggttaa ggccggggaaatgcccctacgccggtggagtgc
Query YVNSYGEFVEHHKIK <---Intron---> ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITS <---Intron---> DDLFSLPYCPGKTL
||||||||||||||| < 3076nt > |||||||||||||||||||||||||||||||||||||| < 984nt > ||||||||||||||
Target YVNSYGEFVEHHKIK VTNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITS DDLFSLPYCPGKTL
tgattggtggccaaa gaaaagcgattaggctgagaggaccttgacggagttaaa ggcttccttcgaat
atacagattaaaata gt ag tcaaagaacaacccatttccgagcgatgtagaaaagtcg gt ag aattctcagcgact
tctctagttattaag gctaaaggtttttagtcaagtagagcaacaataacttt ttctttgtcctcaaa
Query VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVM <---Intron---> VQQLEKGSPGKLKVLAKSTEGTE
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| < 1543nt > /||||||||||||||||||||||
Target VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVM IQQLEKGSPGKLKVLAKSTEGTE
ggggttggcgtggtcggtgcggagagctacccgtgcgaggaggttagccggatccatacga acctgagtcgacagtgataggag
ttgccatctagcgttcgtgtatctttgctttggtaaatcaatgcataaagtattgattctt gt ag taataagccgatattcaccagca
ggtcttccggtagtgtctcatcatgacactctctcaagaaagtccgggttggcagacatgg tagggatataggaagtaccaaaa
Query TIEGVYNT <---Intron---> VLLAIGRDSCTRKIGLEKIGVKINEK <---Intron---> SGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVA
|||||||| < 7925nt > |||||||||||||/|||||||||||| < 560nt > ||||||||||||/|||||||||| | ||||||||
Target TIEGVYNT VLLAIGRDSCTRKMGLEKIGVKINEK SGKIPVNDVEQTSVPYVYAVGDISEGKPELTPVA
aagggtaa gttgagcgttaaaagtgaaggaaaga agaacgagggcaagctgtggggatggacgcacgg
ctagtaac gt ag tttctggacgcgatgtaatgtataaa gt ag ggatctaataacgtcatactgatcagacatcctc
ataactca tgattttcctagagcgggtccattg gtaaatattgagctgatctttgttggtgagcttcc
Query IQSGKLLAQRLFGASLEK <---Intron---> CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLE <---Intron---> IYHTLFWPLEWTVA
||||||||/||||||||| < 6846nt > |||/|||||||||||||||||/|||||||||||||| < 4782nt > ||||||||||||||
Target IQSGKLLARRLFGASLEK CDYVNVPTTVFTPLEYGCCGLAEEKAIEVYKKENLE IYHTLFWPLEWTVA
actgaccgcactggttga tgtgagcaagtaccgtgttgtgggagaggtaagacg atcatttccgtagg
tacgattcggttgcctaa gt ag gaatatcccttcctaaggggtcaaactataaaaata gt ag taacttgctagctc
agacggatgattgctaag ttttttgtggtttggttccaataaattaataagtaa atttgcgttagaat
Query GRENNTCYAKIICNKFDH <---Intron---> DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE <---Intron---> VFTTL
||||||||||||||| || < 2790nt > ||||||||||||||||||||||||||||||||||||||||||||| < 866nt > |||||
Target GRENNTCYAKIICNKLDH DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE VFTTL
gagaaattgaaataatgc gcgagtcacgcaggggacgtgggaatgcaacccggaagaccatgg gtaat
ggaaacgacattgaataa gt ag agttgtattgcacgatcagtccctaggtcaattaactgtaccgga gt ag ttcct
cagccttcagacctaact tggaattttaacctgtcaatatagatgcaagattcctatccatgg gcgta
Query EITKSSGLDITQKGCUG
|||||||||||||||||
Target EITKSSGLDITQKGCUG
gaaattgcgaacagttg
atcaccgtatcaagggg
acagggaatctgaccac
*
------- positions -------
Exon 1 54360735 54361079
Exon 2 54371256 54371316
Exon 3 54372616 54372725
Exon 4 54374604 54374708
Exon 5 54375175 54375247
Exon 6 54377045 54377164
Exon 7 54386123 54386265
Exon 8 54389342 54389457
Exon 9 54390442 54390667
Exon 10 54392211 54392303
Exon 11 54400229 54400305
Exon 12 54400866 54401022
Exon 13 54407869 54407976
Exon 14 54412759 54412854
Exon 15 54415645 54415779
Exon 16 54416646 54416711
-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon:
TAG
*