Output_id: SelU.26.cysteine
---------- ----------------
-Species Chlorocebus sabaeus -Taxid 60711
-Target /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782584|gb|CM001949.1|
-Program genewise
-Query name gi|149690874|ref|XP_001496590.1| PREDICTED: similar to SFLQ611 [Equus caballus]
-Query range 14-244 length:244 coverage: 0.95
-Profile range 21-585 length:585 coverage: 0.97 sec_position: [286]
-ASI: 0.2993 (ignoring gaps: 0.4265)
-AWSIc: 0.6328 Z-score: 1.576
-AWSIw: 0.6661 Z-score: 1.816
-State kept
------- alignment -------
Query LKMFFLQDPSLFTMGMWSIGVGALGAAALALFLANTDVFLPKSQKAALEYLEDTDLKTLEKE <---Intron---> PRTFKAKELWEKNGAVIMAVRR
|/| |||||| ||||||||| |||||||||| |||||||| | |||||||||| |||||||| < 1769nt > ||| ||||||||||||||||||
Target LEMSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKE PRTLKAKELWEKNGAVIMAVRR
cgattccgcattaagattaggggcggggtgtccgaaggtctaccaggcgtcggagcaacgag caatagagctgaagggaaggca
tatcttaacgttctgtgctgcgctgccctctttcacatttcacaacctaataatatactaa gt ag acgctacaatgaaagctttctgg
aagtccgcatcccggggcttaacggttcgaggtccacgtgcgcgaaaggcggtacgaaggg aagtgaaggagaatatgtgtggg
Query PGUFLCRE <---Intron---> EAMDLSLLKPKLDELGVPLYAVVKEQLSTEVEDFQPYFKGEIFLDEK <---Intron---> KKFYGPQRRKMML
|| ||||| < 3372nt > || ||| || ||/||||||||||| / ||||||||||||||||||| < 1318nt > ||||||||||||
Target PGCFLCRE EAADLSSLKSMLDQLGVPLYAVVKEHIRTEVEDFQPYFKGEIFLDEK KKFYGPQRRKMMF
cgttctcg ggggcttcaaatgccggcctgggagcaaaggggtccttaggatcgga aattgccacaaat
cggttgga gt ag accatcctagttaatgtctacttaaatgcataatacatagatttaaa gt ag aatagcaggattt
actcctag atgtgccgacggcggcccctggaggccgcaggtcgttcaaaccgtag agtttaagggggt
*
Query LGFVRLGVWRNFFRAWDRGISGNLEGEGFILGGVFVVGSGRQ <---Intron---> GILLEHREKEFGDKVNVDSVLEAARKIKPQTLASEEK
/||/||||| ||||||/ | ||||||||||||||||||||/| < 4404nt > ||||||||||||||||/ ||||||/ |||||||||/|
Target MGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVVGSGKQ GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
agtaccggttattcgtaggttgacggggtacgggtgggtgac gaccgccgagtggagatctgcgggaaaaccatgtgaa
tgttgtgtgaattgcgaggtcgatagagtttggttttgcgaa gt ag gtttaagaaatgaatattcttaccattacactccaaa
gatctgaggccccacgtacctacgaaaccctgatcggaaagg cttcgcagaatacaacatttgattggcaagtgcagaa
------- positions -------
Exon 1 51416183 51416366
Exon 2 51414322 51414413
Exon 3 51410809 51410949
Exon 4 51409326 51409490
Exon 5 51404811 51404921
-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon:
TGA
*